Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27350 464 / 7e-160 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G67170 81 / 2e-16 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT3G62940 63 / 2e-10 Cysteine proteinases superfamily protein (.1.2.3) AT3G22260 57 / 5e-09 Cysteine proteinases superfamily protein (.1.2.3) AT5G04250 58 / 6e-09 Cysteine proteinases superfamily protein (.1.2) AT3G02070 54 / 7e-08 Cysteine proteinases superfamily protein (.1) AT5G03330 53 / 3e-07 Cysteine proteinases superfamily protein (.1.2) AT2G39320 43 / 0.0001 Cysteine proteinases superfamily protein (.1) AT3G57810 42 / 0.0008 Cysteine proteinases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013303 [exp] 788 / 0 AT2G27350 468 / 7e-162 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10013302 [exp] 442 / 1e-154 AT2G27350 151 / 3e-42 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10005939 [exp] 76 / 1e-14 AT3G62940 363 / 9e-126 Cysteine proteinases superfamily protein (.1.2.3) Lus10040897 [exp] 71 / 3e-13 AT3G62940 359 / 1e-124 Cysteine proteinases superfamily protein (.1.2.3) Lus10006255 [exp] 68 / 5e-12 AT5G67170 363 / 7e-124 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Lus10010459 [exp] 56 / 1e-08 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10037388 [exp] 56 / 3e-08 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 54 / 1e-07 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 53 / 3e-07 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160100 [exp] 589 / 0 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 567 / 0 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.005G140500 [exp] 72 / 3e-13 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.014G134100 [exp] 60 / 1e-09 AT3G62940 338 / 9e-116 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G019700 [exp] 59 / 1e-09 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G036900 [exp] 58 / 1e-09 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 59 / 3e-09 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.006G021700 [exp] 54 / 4e-08 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G050900 [exp] 54 / 1e-07 AT3G57810 301 / 5e-101 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G036700 [exp] 53 / 3e-07 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10005193 pacid=23145817 polypeptide=Lus10005193 locus=Lus10005193.g ID=Lus10005193.BGIv1.0 annot-version=v1.0 ATGACTCGGATTTTGGTTCAGCGAGGCAGTAGTTCTTCTTCTTCTTCCAATCAGAGCAGAGCGGGGCCTTCTTCAGCTGCTCGTCCCGAGACTCAGGCTA CTGCTTCCTCCCAGGTACTTCCAGTTTCGAAGGATGAGGAATTAATAAGCGACGAGGTGCAAGAGCAAATTGTTGCAGGTGAAATTGTGGAGCATAGTGG AAGTAGTGAAAGTAAGGTAATAAAGAATGATCTTCCAGAATGCAAGCTTGATGACCGAAATGAGGGTCTGAATGATGTTGTTGGGGGTACGCTTAATGAT GTCACTTTAGAGTCCGGAGACATAATAAAAGGTGAAATGAGAGAAAGGTCTGTGGTTGAGGATGAAAGTTCAAATGGAGTCTTCTCCCCTGCCGGTACCG GAAGAAGTCAACCACCTCCTCCTCCTGTCCCTCCTCCAAAACTTTTATCAGCAAGCTCTAATCCTAGGAGATTCTTGCCTGATTCTGTTCGAACTGGATC ATCTAGAAGGGCACATGCTTGGCCTGTTGTTTCTGCTAGGAGTTCACCTACAGGGTCAAGGCCATCATCTCCCAGGTCCCATGTGGACAATGAGGGTTAT AACAGTGCCGATGAGCAAAATCCATGCTATAACTCCTCTTATAATGATCTGGAAAGAGAGCGCCAATTTGAGATTGACATTAGGCGGTCTAAAGGATTAG AAGTAAAAAGAATGCTGGAGGATGGAAATTGCCTTTTCCGTGCTGTAGCTGATCAAGTATATGGGGACTCTGAAGCTTACGATCTGATTAGGCAAATGTG CATTGACTATATGGAGCGAGAAAGAGATCACTTTTCCCAATTTATAACCGAAGGTTTTTCCTCTTACTGCAAACGGAAGAGAAGAGACAAGGTCTATGGC AACAACGTGGAGATCCAAGCAATGTCAGAGATGTATAATCGTCCGATTCACATTTATTCATATAGCACAGAGCCTATCAATATATTTCATGGAAACTACA ATACAGATACACCACCGGTACGGCTGAGTTACCACCATGGTAACCATTACAACTCTCTTGTTGATCCACGACGCTTGACGGTTGGTGCTGGGCTCGGTTT TGGCTCTCTTCGAGGGAGAAATGTTGACAAGGATCAAGTGAAAGCTGCTATTAAGGCACAACAGGATCAGCAGATTGATAACGCACTTGTAGCTGAAGGG CGGTTTTACTCTGATCTCGAGCTTACCGAAAAGGAAATGGAGCGAATGGTAATGGAAGCTTCTCGAGCCGAGTATCTTGCCAATGATAAGTGGAAACCCC AACTTGGCCGCAAAGAATCTTCTACCTCTGGCGCTGCTGAACCATCGTCCTCCGGCGCTTACCCTTCGGGGAGTGAGACAAAGGCGGAAGGGCCACAAGA GCGTGGCGTACGAGACGGGTGCCTTAGTAAGAGCATGCAAATGGTGCTATCTATGGGATTCAGCTATCTGCAAGCGATCGAAGCTTATAGCATATTCGGG GATGATGTCGACTCAATGGTTTGTTACCTCCTGGAAACTGACAGTAGCAGCCGACGCAAAAAAGGCAAGGCAACTGAGTGA
AA sequence Show only first row Show all	>Lus10005193 pacid=23145817 polypeptide=Lus10005193 locus=Lus10005193.g ID=Lus10005193.BGIv1.0 annot-version=v1.0 MTRILVQRGSSSSSSSNQSRAGPSSAARPETQATASSQVLPVSKDEELISDEVQEQIVAGEIVEHSGSSESKVIKNDLPECKLDDRNEGLNDVVGGTLND VTLESGDIIKGEMRERSVVEDESSNGVFSPAGTGRSQPPPPPVPPPKLLSASSNPRRFLPDSVRTGSSRRAHAWPVVSARSSPTGSRPSSPRSHVDNEGY NSADEQNPCYNSSYNDLERERQFEIDIRRSKGLEVKRMLEDGNCLFRAVADQVYGDSEAYDLIRQMCIDYMERERDHFSQFITEGFSSYCKRKRRDKVYG NNVEIQAMSEMYNRPIHIYSYSTEPINIFHGNYNTDTPPVRLSYHHGNHYNSLVDPRRLTVGAGLGFGSLRGRNVDKDQVKAAIKAQQDQQIDNALVAEG RFYSDLELTEKEMERMVMEASRAEYLANDKWKPQLGRKESSTSGAAEPSSSGAYPSGSETKAEGPQERGVRDGCLSKSMQMVLSMGFSYLQAIEAYSIFG DDVDSMVCYLLETDSSSRRKKGKATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10005193 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	2.6	0.8140
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	3.2	0.7700
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	3.5	0.7810
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	14.6	0.6742
AT1G59077			unknown protein		Lus10022089 [exp]	15.8	0.7948
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	17.0	0.7467
AT3G56720			unknown protein		Lus10027280 [exp]	21.6	0.7062
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	24.8	0.7606
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10031581 [exp]	25.5	0.7885
AT3G54630			unknown protein		Lus10030584 [exp]	46.3	0.6635

Compare expression of checked genes

Lus10005193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.