Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44330 723 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013307 [exp] 956 / 0 AT3G44330 743 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160400 [exp] 795 / 0 AT3G44330 805 / 0.0 unknown protein Potri.004G198200 [exp] 777 / 0 AT3G44330 820 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF05450 [flax] [poplar] Nicastrin Nicastrin
Representative CDS sequence Show only first row Show all	>Lus10005197 pacid=23145829 polypeptide=Lus10005197 locus=Lus10005197.g ID=Lus10005197.BGIv1.0 annot-version=v1.0 ATGTATTCTATGAAGCTGCGCAGCTCGGATGTGCTGACCTCCTCCTTCTACTCCGTAATCCCACTCCTCTTCTTACTCCTTGCCTGGGTCGAGCTCTCCG ACGCCGCATCCGTCGTCGACGTCTACCGTCTGGTCCAGTATGACATCTCCGGCGTCTCGTTTGGATCTCGCGTCGCCGCACTCAATCACCACGCAGTCTC TTTGAATTCATCGTCCGGCGCCGACTTCTCTCGCTCCGTTCTCATCATTCCCCTGCGTGAACTGAACGTATCTTTTGTCAAAGAATATATCTCAGAAAGA AAGCCTCTGGGTGGATTGTTGCTTCTACTTCCTCAAATGTTTAATTTTGAGAAGGGAGATACTGCGGGTGATACTAAGGATGACAGTGATGAGAAGGAGC TATTTGGGAATGTTTTGACTGAGCTAGAAGCAATCCTGATACATGCCAATATACCTTACCCTGTATATTTTGCTTTTGAGCATGATGACATAGAAGATGT ATTGACTGACATCGAGAGGAATGATGTCAATGGTCCAGCTGCTTCTGCAACTAATGGCGGGTTAGTTTATAGGAGTCCTGCTGCTATTGTGAAAGGAAAG AATGGATATTGCAGATACAAGTTTGTTGTCTCGGCTCCAGAGCCTAAGAAGGTTGCATCTCCAATCATCACAAACATTCAGGGATGGTTGCCAGGACTAA AGCTAGATGGAGATACAAATCAACTTCCGACGATTGCCATTGTAGCTTCATATGACACCTTTGGTGCTGCTCCTGCTTTATCAGCTGGAAGTGATAGCAA TGGAAGTGGTGTTGTGGCTCTTCTAGAAATTGCTAGGTTATTTTCTCTACTTTATTCCAATCCAAAGACAAGAGGAAAGTACAACTTACTTTTTGGACTG ACTTCTGGTGGACCGTACAACTACAATGGAACTAACAAGTGGCTTAGGACCTTTGATCAACGGTTACGAGAGAGCATTGATTATGCTATTTGCTTAAATA GCATTAGCTCCTGGGATGACAAATTGTGGGTTCACGTGTCAAAACCTCCTGAAAATGCCTATGTGAAACAAATTTATGAACGACTCTCTTCTGTAGCAGG AGAACTTGGTTTTGAAGTTGGTCTCAAGCACAAGAAAATCAATATTTCTAACCCTCGAGTAGCTTGGGAGCATGAACAGTTCTCAAGGATAAGAGTCACC GCTGCCTCTCTTTCCGGACTCTCTTCGGCACCCAAACTGCTAATGAGCACTGGAAGTCTGTCTGATAACAGATATCTTGTAAACGAAGATTCAATCATGA GAAGTATCAAATTAGTTGCTGAGAGTATTGCGAGGCATATATACGGTCAGCAGGAGAAGATTCCGGTTTTCACAGATGGTAACAGTTTGGCTGTCGATCG GTCTTACATTAGATCATGGCTTGATCTTTTGTCACGAACACCTCGAGTGGCACCATTTCTTACAAAGAATGACCCTTTGGTATCAGCATTGAAAAAGGAG TTGGACGAACATACCCATGAAGTAAGTGTGCAACACGAGCCGCTCGATGGGATGTTCACATTTTACGATATAACCAAAGCCAAGCTAAACATATATCAGG TGGCCAGCGTTACATTAGATTTGCTACTGCTCCTGGCAGTTGGATCATACCTGACAGTACTCTTCAGTTTTCTCGTCATCACAACCCGGGTATGGAACAC ATTTCTCCTTCTCGATATGGCTTATGGGCCGACTGCTACTCTATGCTTAACCAACTCGGTTAACTTTGAACAGGGTCTCGACGATCTCATCAGCATATTC AAACGTCCTCCATCCCGGAAATCAAAAACCGGTTGA
AA sequence Show only first row Show all	>Lus10005197 pacid=23145829 polypeptide=Lus10005197 locus=Lus10005197.g ID=Lus10005197.BGIv1.0 annot-version=v1.0 MYSMKLRSSDVLTSSFYSVIPLLFLLLAWVELSDAASVVDVYRLVQYDISGVSFGSRVAALNHHAVSLNSSSGADFSRSVLIIPLRELNVSFVKEYISER KPLGGLLLLLPQMFNFEKGDTAGDTKDDSDEKELFGNVLTELEAILIHANIPYPVYFAFEHDDIEDVLTDIERNDVNGPAASATNGGLVYRSPAAIVKGK NGYCRYKFVVSAPEPKKVASPIITNIQGWLPGLKLDGDTNQLPTIAIVASYDTFGAAPALSAGSDSNGSGVVALLEIARLFSLLYSNPKTRGKYNLLFGL TSGGPYNYNGTNKWLRTFDQRLRESIDYAICLNSISSWDDKLWVHVSKPPENAYVKQIYERLSSVAGELGFEVGLKHKKINISNPRVAWEHEQFSRIRVT AASLSGLSSAPKLLMSTGSLSDNRYLVNEDSIMRSIKLVAESIARHIYGQQEKIPVFTDGNSLAVDRSYIRSWLDLLSRTPRVAPFLTKNDPLVSALKKE LDEHTHEVSVQHEPLDGMFTFYDITKAKLNIYQVASVTLDLLLLLAVGSYLTVLFSFLVITTRVWNTFLLLDMAYGPTATLCLTNSVNFEQGLDDLISIF KRPPSRKSKTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44330			unknown protein		Lus10005197 [exp]	0	1
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	11.6	0.9053
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	18.3	0.9028
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	23.3	0.9016
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037322 [exp]	24.8	0.8970
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10007574 [exp]	27.9	0.8872
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	33.2	0.8923
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	38.2	0.8895
AT2G38840			Guanylate-binding family prote...		Lus10018755 [exp]	42.3	0.8614
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	44.7	0.8871
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	45.8	0.8877

Compare expression of checked genes

Lus10005197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.