Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22320 297 / 1e-96 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G19680 70 / 4e-13 Leucine-rich repeat (LRR) family protein (.1) AT2G34680 57 / 3e-08 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT1G07390 52 / 5e-07 AtRLP1 receptor like protein 1 (.1.2.3) AT4G35470 49 / 5e-06 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G15410 47 / 1e-05 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G03260 44 / 0.0002 Outer arm dynein light chain 1 protein (.1.2) AT4G26050 43 / 0.0003 PIRL8 plant intracellular ras group-related LRR 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013308 [exp] 638 / 0 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10033444 [exp] 62 / 4e-10 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10020932 [exp] 62 / 4e-10 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10010891 [exp] 61 / 4e-10 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10012715 [exp] 61 / 6e-10 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10032668 [exp] 55 / 2e-08 AT3G15410 261 / 2e-84 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10038534 [exp] 56 / 8e-08 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10023270 [exp] 51 / 2e-06 AT2G34680 1368 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10031861 [exp] 47 / 1e-05 AT2G30105 437 / 7e-154 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199200 [exp] 382 / 1e-129 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.018G086200 [exp] 68 / 2e-12 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.006G163900 [exp] 66 / 2e-11 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.002G097800 [exp] 59 / 3e-09 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.011G090200 [exp] 54 / 2e-07 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.001G357700 [exp] 54 / 2e-07 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.011G121700 [exp] 54 / 2e-07 AT3G15410 749 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.007G065000 [exp] 51 / 9e-07 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 51 / 1e-06 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.006G072700 [exp] 50 / 2e-06 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10005198 pacid=23145846 polypeptide=Lus10005198 locus=Lus10005198.g ID=Lus10005198.BGIv1.0 annot-version=v1.0 ATGTATCGCTCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGGTTTCCATTCATTCCGTGTTAAACTTCCATATCTCAAGCTTCAATACTC TGCAGGTTTCTTGCCTCAGTGAATTCAAAAACCTGGAGCGTCTAGACCTCGCTTTCAACAGTCTAACTTCGCTCGAGGGATTGAAGTCGTGCTTCAACTT GAAGTGGCTATCCGTTGTGCAAAACAAACTGCAGAGCTTAAAAGGAATTGAATCACTTCCTAATCTCACTGTATTGAATGCTGGGAAAAACAAGCTCAAG TCCATGGGTGAGGTGAAATCTGTTGTGAGCCTGAGAGCATTGATCCTAAATGATAATGAGATTGTTTCGATTTGCAAACTAGATCAGTTGAAAGAATTGA ACACTCTCGTGCTCTCTAGGAATCCAATCCGTGAAATTGGCGAATCCCTTTCGAAGGCAAAATCCATGACAAAGATTTCTCTTTCACACTGCCAACTTCA GGCCATCGGTTCTTCATTCAAGGGATGCATTGAGTTGAAAGAGCTCAGACTTTCCCACGACGAAATTTCCACTCTTCCTAGTGAACTGGCCAGTAACAAG AAACTCCAGAATCTGGATATGGGCAACAATGGCATCACAAGATGGTCAGATTTGAAGATCCTGAGCTCATTAGTTGATGTTAAGAACCTCAACTTGCTAG GGAATCCTATAGCTGACAAGGATAAGTTACTGAAGAAGATCAAAAAGCTACTGCCAAATCTGCAAATCTTCAATTCCAAACCAATAGATAAAGTGAAAGC AAGTGGTAAGGCCAACAGATTCGCCGGTGTAGTGCATGCTCCTTTACTCGACGAAAATGAGAAGGATTTAGCAAAGCCAAACAGATCCATTGGCCATGAA AAGGATCGCGAAGAAAGCAGTGAGCCTGATAATGCTACTACCAAGGGACAATCGGATAAAACAGGGGATAAGAAAAGGAAGAGAGAAAATGTTAACAGTT TCGATGTAGAGAACTTGAAGCAGATGAAAGCGGGAGGTGAGAATGAGCTAGTTGCCAGGAAAGAGGCTAAAGAATCGACGGAGGAACTCGGAGAGCTTGA TGTTATCGACAATGGAGAAATCTCATTTGCAGACCTTTTTGCTGGAAGGGAGAATACAATGACGGAGGACAGAGCTGCAGAAGACAAGAATTCTACCGGT AGCTTCGTTACCTCCTCGACAAAGAAGAAGAAGAAAAACAAAACCAGCGATTCAAGCTTCGATGATCAGATGTCGTCTGAGCTCGAAATCGGCCTCGGTG GAGCATCAGCATGGGAGTGA
AA sequence Show only first row Show all	>Lus10005198 pacid=23145846 polypeptide=Lus10005198 locus=Lus10005198.g ID=Lus10005198.BGIv1.0 annot-version=v1.0 MYRSLPLPPPPPPPPPLVSIHSVLNFHISSFNTLQVSCLSEFKNLERLDLAFNSLTSLEGLKSCFNLKWLSVVQNKLQSLKGIESLPNLTVLNAGKNKLK SMGEVKSVVSLRALILNDNEIVSICKLDQLKELNTLVLSRNPIREIGESLSKAKSMTKISLSHCQLQAIGSSFKGCIELKELRLSHDEISTLPSELASNK KLQNLDMGNNGITRWSDLKILSSLVDVKNLNLLGNPIADKDKLLKKIKKLLPNLQIFNSKPIDKVKASGKANRFAGVVHAPLLDENEKDLAKPNRSIGHE KDREESSEPDNATTKGQSDKTGDKKRKRENVNSFDVENLKQMKAGGENELVARKEAKESTEELGELDVIDNGEISFADLFAGRENTMTEDRAAEDKNSTG SFVTSSTKKKKKNKTSDSSFDDQMSSELEIGLGGASAWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	0	1
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	1.0	0.9308
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10015657 [exp]	1.7	0.9015
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	4.8	0.8779
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	5.0	0.8997
					Lus10024694 [exp]	7.0	0.8959
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	8.0	0.9082
AT4G40030			Histone superfamily protein (....		Lus10000284 [exp]	8.8	0.8926
AT1G76405			unknown protein		Lus10016039 [exp]	10.0	0.8760
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	11.0	0.8935
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	13.0	0.8869

Compare expression of checked genes

Lus10005198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.