Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11590 234 / 1e-68 unknown protein AT5G22310 151 / 2e-39 unknown protein AT5G41620 126 / 2e-30 unknown protein AT1G50660 111 / 3e-25 unknown protein AT1G64180 108 / 2e-24 intracellular protein transport protein USO1-related (.1) AT3G20350 101 / 4e-22 unknown protein AT2G46250 82 / 2e-16 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013311 [exp] 886 / 0 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 772 / 0 AT3G11590 285 / 1e-88 unknown protein Lus10021324 [exp] 221 / 1e-62 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 217 / 1e-61 AT3G11590 587 / 0.0 unknown protein Lus10017543 [exp] 141 / 4e-35 AT5G41620 500 / 6e-170 unknown protein Lus10028746 [exp] 137 / 5e-34 AT5G41620 497 / 4e-170 unknown protein Lus10032637 [exp] 117 / 2e-27 AT1G50660 625 / 0.0 unknown protein Lus10021521 [exp] 116 / 9e-27 AT1G50660 750 / 0.0 unknown protein Lus10043111 [exp] 114 / 2e-26 AT1G50660 616 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G160900 [exp] 352 / 1e-113 AT3G11590 399 / 9e-132 unknown protein Potri.004G199500 [exp] 353 / 2e-113 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 248 / 2e-73 AT3G11590 560 / 0.0 unknown protein Potri.006G207800 [exp] 228 / 5e-66 AT3G11590 582 / 0.0 unknown protein Potri.003G135000 [exp] 159 / 4e-41 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 155 / 4e-40 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 148 / 1e-37 AT5G41620 347 / 8e-111 unknown protein Potri.002G166600 [exp] 147 / 3e-37 AT5G41620 345 / 6e-110 unknown protein Potri.011G090100 [exp] 119 / 9e-28 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 103 / 9e-23 AT1G50660 390 / 1e-126 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09636 [flax] [poplar] XkdW XkdW protein
Representative CDS sequence Show only first row Show all	>Lus10005200 pacid=23145823 polypeptide=Lus10005200 locus=Lus10005200.g ID=Lus10005200.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAGAAGAGGAGATTGAGCATTGCAAGATCAGGAAAAGAGGCGCCAACTCGTCTAATTCTTCGTCGTCTTCTTTGGTTCAGAGGTACAGAT TCAAGCGTGCTATTCTTCTCGGGAAACGCGGCGGCGGTGCCGGTGGGTTTTCGACACCTGTCCGGATGATGTCAGCGGCGAAATCTCCGACCGCGGCGGT ATGTCGGCGGAGTGTCGGCGGCGGCGGAGAAGATTCGGTTTTTTCGGCTAGGAAGCTGGCGGCGACTGTTTGGGAAATGAATAAGGTGGAGCATTTTAGC GGAAGGAGGAAGGAAGATTCTTCAGAGGATTCAAAGGAAGATTCTTCAAATGAAAAGAAGTTGCTGCCTGGATTGTCAGATCCATCGCCATTGCTGGAAG ATGATGCGGATCGGAGGAGGAATGGTCAGAGAGGAAGAAGAAGGTCGTCATCAGCTGTGACGAAGAACATGCTTCAGCTTGCTGATTATAATCCCAGTTT GATGGAGGTGGAGAGTCAAGCTAAGATGGGGAAACCACAAATGGAATGTGTAACCGCCACCAAAACCAAGCTGAAAGACATCAGCAATGGCTTACTAACA TCCAAAGAGCTTCTCAAAGTAATGAACCGTCTATGGGGTTTCGACGACCAAGGTTCATCAGGAATGTCACTTCTCTCAGCTCTCAAGTCCGAGATAGACA GGGCAAGGATCCAGGTGAACCACCTGATCAAAGACCACCAAAATTCCAATCGCCACGAGATCGACACCCTCCTCAAGACTTTCGAAGAAGAGAAGGCGAC ATGGAGGAGAAAAGAGCGATCTCGAATCCGCAACGCCATATCCTGCATTTCGGAGGAGCTTGAAGTGGAGAGAAAGCTAAGGAAGCAGACTGAGAGGCTG AACAAGCGGCTAGGGAACGAGCTGGCCGAGACTAAGGCAGAGTTGAGAAAGGTGAGGGAAGAGCTCGAGACCGAGAAGAGGGCCAAGGAGATATTGGAGC AAGTGTGTGATGAGTTGGCTAGTGGAGTTGGAGGAGAAGATAGAGATATAGTTGAGGAAGTGAAGAGGGAAACTGCGAAAGTTCGAGAGGAAGTTGAGAA AGAAAGGGAGATGCTTTTGCTTGCTGATGTTCTTAGAGAGGAAAGGGTTCAGATGAAGCTATCCGAGGCGAAGTATCTTTTCGAAGAGAAGAATGCTGCT GTCGATCGGCTGAAGAATGAGCTCGAGTGTTATTTGTATGGCAAGGAAGATCATCATGGAGAGGAGTACTCACGGCCTGATTACGATAGGATCAAGGAGC TCGAGGCTTACTTGAAAGAGATCGAATTCGGGGCGTTGCAGAAGTCGAGGGAGAGTCTTAATGCAGAAGTTATCGAGGGGGGTGATGATGATTCAGGTGA TGATAGTGAACTTCACTCTATAGAGTTGAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAGCCTTTAAAATGGAGCTTTGAAGGTATA GTGCTTGACAACCCTAAGAGGATTTCGGTTGATAAGGACATGAAAGGGATTGAATGGGGGAGCATTTCCTTGTACAAGAAGGATTCAAATTCCGACAATG TTGTCCTATTGGATTCTGATGCTATAAACCGTGAGATTCAACAAATGTTGGATAACGAAAGACAATTATCCGGTGGTCCCGGTCTAGACGAGAAGGCCAA GAGTCTTAGGGAATTGTTGTTGTTATCAGGATCAAGGAGAGAATCATCAGCATCAGCACAAAGTGCTTCAGGCATTATTATTCCTCTGCAGGAGCTGAAC AATATTGGTGGTTCTGGCATTTTTCCGGATCATCGAGTTGTTGGGGTGAAAGGCGAAAGAAGGCTATCAACGAGTTCGAAATAG
AA sequence Show only first row Show all	>Lus10005200 pacid=23145823 polypeptide=Lus10005200 locus=Lus10005200.g ID=Lus10005200.BGIv1.0 annot-version=v1.0 MEGGEEEIEHCKIRKRGANSSNSSSSSLVQRYRFKRAILLGKRGGGAGGFSTPVRMMSAAKSPTAAVCRRSVGGGGEDSVFSARKLAATVWEMNKVEHFS GRRKEDSSEDSKEDSSNEKKLLPGLSDPSPLLEDDADRRRNGQRGRRRSSSAVTKNMLQLADYNPSLMEVESQAKMGKPQMECVTATKTKLKDISNGLLT SKELLKVMNRLWGFDDQGSSGMSLLSALKSEIDRARIQVNHLIKDHQNSNRHEIDTLLKTFEEEKATWRRKERSRIRNAISCISEELEVERKLRKQTERL NKRLGNELAETKAELRKVREELETEKRAKEILEQVCDELASGVGGEDRDIVEEVKRETAKVREEVEKEREMLLLADVLREERVQMKLSEAKYLFEEKNAA VDRLKNELECYLYGKEDHHGEEYSRPDYDRIKELEAYLKEIEFGALQKSRESLNAEVIEGGDDDSGDDSELHSIELNNNNNNNNNNNNNNKPLKWSFEGI VLDNPKRISVDKDMKGIEWGSISLYKKDSNSDNVVLLDSDAINREIQQMLDNERQLSGGPGLDEKAKSLRELLLLSGSRRESSASAQSASGIIIPLQELN NIGGSGIFPDHRVVGVKGERRLSTSSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11590			unknown protein		Lus10005200 [exp]	0	1
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	5.7	0.7394
AT5G38790			unknown protein		Lus10003044 [exp]	8.5	0.7403
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	12.8	0.7455
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	13.3	0.7077
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10039413 [exp]	14.7	0.7203
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	23.2	0.6838
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031323 [exp]	25.8	0.6693
AT1G78790			unknown protein		Lus10042781 [exp]	25.9	0.6657
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10023482 [exp]	26.9	0.7135
AT5G10750			Protein of unknown function (D...		Lus10026907 [exp]	30.3	0.7357

Compare expression of checked genes

Lus10005200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.