Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 559 / 0 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44300 464 / 5e-165 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 458 / 1e-162 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44310 453 / 1e-160 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 82 / 1e-17 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 66 / 1e-11 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT4G08790 64 / 2e-11 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G64370 54 / 7e-08 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013313 [exp] 696 / 0 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 281 / 3e-91 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10018449 [exp] 264 / 3e-85 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10011234 [exp] 260 / 7e-84 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10016999 [exp] 91 / 1e-21 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10026464 [exp] 76 / 4e-15 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 76 / 4e-15 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10030303 [exp] 64 / 3e-11 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10004862 [exp] 64 / 5e-11 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199600 [exp] 613 / 0 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.006G207700 [exp] 360 / 6e-123 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.016G074200 [exp] 358 / 9e-122 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.004G201400 [exp] 75 / 6e-15 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.008G047100 [exp] 71 / 1e-13 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.006G222900 [exp] 66 / 7e-12 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.010G214600 [exp] 64 / 3e-11 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.007G115900 [exp] 53 / 2e-07 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Potri.009G161001 [exp] 70 / 5e-07 AT5G22300 53 / 3e-07 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10005201 pacid=23145818 polypeptide=Lus10005201 locus=Lus10005201.g ID=Lus10005201.BGIv1.0 annot-version=v1.0 ATGTCGCTCGTCAACACAGCGCTCCCTTCCGACGGCCCAATCTTCGCCGAAGTGGACATGGGCTCCGATTCCTCCGCCCCCGTCGTCAGAGCCACCGTCG TCCAGGCCTCCACCATCTTCTACGACACCCCCGCCACTCTGGATAAGGCAGAAAGGCTGCTGGCGGAAGCAGCTGGGTACGGCGCTCAGCTGGTAGTATT CCCAGAAGCGTTCATCGGTGGATACCCTCGTGGTTCGAATTTCGGAGCTGCCATTGGGAATCGAACGCCTAAGGGTAGAGAGGAGTTCCGCAAATATCAT GCTGCTGCCATTGATGTTCCTGGACCAGAAGTGGACCGATTGGCTACAATGGCTAGCAAGTACAAGGTGTTCTTGGTGATGGGTGTGATAGAAAGAGATG GATACACACTCTACTGCACCGTACTATTCTTCGATGCTCAAGGCCATTACCTTGGGAAGCACAGGAAGATGATGCCTACTTCAGTCGAGCGCATCATTTG GGGGTTTGGAGACGGTTCGACCATTCCGGTTTTCGATACGCCGGTTGGGAAGATAGGCGCTGCCATCTGCTGGGAGAACAGAATGCCACTTCTCAGGACT GCAATGTATGGGAAGGGCATTGAAATATATTGCGCGCCAACAGCAGACTCGAGGCCAACTTGGACGGCATCGATGACTCACATTGCCCTCGAGGGGGGAT GCTTCGTACTGTCCGCCAATCAATTCTGTCGTCGGAACGATTACCCTCCATCTCCCGAATACGTATTTGCAGGCACGGAGCACGAACTCAACCCGGATTC CGTCGTCTGTGCCGGAGGCAGTCTTATAATCTCCCCGATGGGAACCGTTCTAGCCGGACCTAATTTCGAAGGAGAGGCTCTGATCTCTGCCGATTTAGAT CTTGGCGAAATCGCGAGGGCGAAATTTGACTTTGACGTGGTGGGGCATTACGGGAGGCCGGAGGTTCTGAGCTTGACTGTAACTGACCATCCGGCAAGAC CAGTTATATACACAACATCAGATGACGCAAAAACTGAGAGTTCTGAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10005201 pacid=23145818 polypeptide=Lus10005201 locus=Lus10005201.g ID=Lus10005201.BGIv1.0 annot-version=v1.0 MSLVNTALPSDGPIFAEVDMGSDSSAPVVRATVVQASTIFYDTPATLDKAERLLAEAAGYGAQLVVFPEAFIGGYPRGSNFGAAIGNRTPKGREEFRKYH AAAIDVPGPEVDRLATMASKYKVFLVMGVIERDGYTLYCTVLFFDAQGHYLGKHRKMMPTSVERIIWGFGDGSTIPVFDTPVGKIGAAICWENRMPLLRT AMYGKGIEIYCAPTADSRPTWTASMTHIALEGGCFVLSANQFCRRNDYPPSPEYVFAGTEHELNPDSVVCAGGSLIISPMGTVLAGPNFEGEALISADLD LGEIARAKFDFDVVGHYGRPEVLSLTVTDHPARPVIYTTSDDAKTESSEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10013313 [exp]	1.0	0.8671
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	3.5	0.8475
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	6.7	0.7903
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Lus10033039 [exp]	7.3	0.8158
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	7.5	0.8008
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	8.1	0.8051
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	11.3	0.8124
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	12.0	0.7908
AT5G51040			unknown protein		Lus10043024 [exp]	12.2	0.8020
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	13.1	0.7692

Compare expression of checked genes

Lus10005201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.