Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000801 [exp] 205 / 1e-66 ND / Lus10015702 [exp] 189 / 2e-62 ND 38 / 0.004 Lus10032804 [exp] 188 / 5e-62 ND / Lus10005265 [exp] 167 / 6e-55 ND / Lus10010778 [exp] 166 / 2e-54 ND / Lus10010402 [exp] 164 / 1e-52 ND / Lus10020608 [exp] 160 / 2e-52 ND / Lus10003364 [exp] 160 / 5e-52 ND / Lus10000302 [exp] 160 / 1e-51 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005203 pacid=23145831 polypeptide=Lus10005203 locus=Lus10005203.g ID=Lus10005203.BGIv1.0 annot-version=v1.0 ATGTGGTTGGAGCAGGACTTCATCAGATTTCACCGGCTACACCTTATGTTCGAGAGGGCGTCGGCTGGGGGGGGTGGTGGTGCTCGGCTACACCTTATGT TCGAGAGGGCGTCGGCTGGTGGGGATGTTGGTCCAGGGTACATGGACTGGTTCCTCGAGCACAGTCACCCACGCATCGTGGCGCCGGCTAACCCCGGTGT GGGAGTCCCGGCTGAGCTGATTACACAGCGAGTGTTCGATGGTATGGCCTCCTACTTCGATGGCACGCTTGGGCGGCAGCACGCCGACTCTCTTCAGGAG TACTACGACCACATGGAGGGGCTTCGGGGGCCGGTTGGGGGTCTCTATACGGGGGAACGGAGGCCGAGAGATCTCTATACGGGGTATCGGAGCCAGAGAG AGAGTTGA
AA sequence Show only first row Show all	>Lus10005203 pacid=23145831 polypeptide=Lus10005203 locus=Lus10005203.g ID=Lus10005203.BGIv1.0 annot-version=v1.0 MWLEQDFIRFHRLHLMFERASAGGGGGARLHLMFERASAGGDVGPGYMDWFLEHSHPRIVAPANPGVGVPAELITQRVFDGMASYFDGTLGRQHADSLQE YYDHMEGLRGPVGGLYTGERRPRDLYTGYRSQRES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10005203 [exp]	0	1
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023434 [exp]	1.4	0.7098
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	5.1	0.7635
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004855 [exp]	8.1	0.6942
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	9.8	0.6185
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	10.6	0.6896
AT3G18180			Glycosyltransferase family 61 ...		Lus10032457 [exp]	12.2	0.6376
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	18.7	0.6166
					Lus10033096 [exp]	20.0	0.6166
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	21.2	0.6166
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	22.4	0.6166

Compare expression of checked genes

Lus10005203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.