Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22290 280 / 8e-92 NAC FSQ6, FAN, ANAC089 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) AT2G27300 278 / 2e-91 NAC NTL8, ANAC040 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) AT3G44290 259 / 9e-84 NAC ANAC060 NAC domain containing protein 60 (.1) AT1G65910 175 / 8e-49 NAC ANAC028 NAC domain containing protein 28 (.1) AT4G35580 172 / 1e-48 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT5G17260 171 / 1e-48 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G33060 169 / 1e-46 NAC ANAC014 NAC 014 (.1.2) AT3G17730 159 / 2e-46 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G03200 164 / 6e-46 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G24590 163 / 1e-45 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013316 [exp] 644 / 0 AT5G22290 285 / 5e-94 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10034183 [exp] 354 / 1e-119 AT5G22290 263 / 5e-85 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10043402 [exp] 350 / 2e-119 AT5G22290 262 / 4e-86 fructose-sensing quantitative trait locus 6, NAC domain containing protein 89 (.1) Lus10042284 [exp] 162 / 8e-47 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 162 / 1e-46 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 169 / 2e-46 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 170 / 3e-46 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10033251 [exp] 167 / 3e-46 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 167 / 3e-46 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161300 [exp] 331 / 8e-110 AT2G27300 273 / 4e-88 Arabidopsis NAC domain containing protein 40, NTM1-like 8 (.1) Potri.012G007500 [exp] 171 / 2e-47 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.017G139500 [exp] 170 / 7e-47 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 161 / 4e-46 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.011G149300 [exp] 168 / 5e-46 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.015G004100 [exp] 166 / 6e-46 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.003G089800 [exp] 159 / 5e-45 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.010G174600 [exp] 158 / 7e-45 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.004G081000 [exp] 164 / 1e-44 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.018G003800 [exp] 157 / 1e-44 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10005204 pacid=23145835 polypeptide=Lus10005204 locus=Lus10005204.g ID=Lus10005204.BGIv1.0 annot-version=v1.0 ATGGCGACGGTGGCAACAAAAAATGGAGGAGGGGTGTCGAGGGAGACGAAGAAGTCGATAGAGGCGTCGACGATGTTTCCAGGCTTCCGATTCTCTCCCT CCGACGTTGAGCTGATATCGTACTACCTGAAGAAGAAGTTGGACGGCGAGGAGAAGTGCGTTGAGGTCATTCCTCATGTGGAGATTTGTAAACACGAGCC CTGGGATTTGCCTGCCAAATCAGTGGTCCAATCAGAGACGGAGTGGTTCTTCTTCTCGTCTCGAGGCAGGAAGTACCCTAATGGATCACAGAGCAAAAGG GCGACGGAGCTCGGCTACTGGAAGGCCACCGGGAAAGAGCGCAGCGTCCGGTCCGGCTCCGCCGTCATCGGAACCAAGCGCACCCTCGTCTTCCACATCG GCCGTGCCCCTAAAGGCGAACGCACCGAGTGGATCATGCACGAATTCTGCATGCACTCCGGTTCCAATGATTCATTGGTTGTTTGCCGCCTGAGGAGGAA CGTGGATTTCCGGGGGCATCACCCTACCAATGACGCTTCAGAAGGAAACAGGGTCGTTGAGGTAAACGCAGCAGCGGAGAGCTCCAAGAAGACAAACAGC AGCACCTCCAATTCCTATTCGATTGAGCAGATTGATTCAGCTTCGAATGACTTCGTGTGCTATCAACAGCCAAACGTGGTCACCCCTCCAGCAGTTGCAG AAACCTCCAACCATTTCCAGCTGCTGAATGGATTCACCCAGCCGGATGAGGATTTCTTCGCCGAAATTCTCAACGACGACATAATCAAACTAGACGAGAC ATTACTCCCCACCTCTCTGCCTCACGCCTCAGCAGATAGGGTACAGGGTCTGCAGCCATCCTGGATGGCTGCTGCACCCTCGAACAGGAGAGTGAAGCTG GAGAGTCGTCGTCGGAAGAAGAAAATCGACCAAGTGGCTGCAGCGGTGGAAGGAGAAGACGAGGAGGCAGAGAAGGAGAGGCGGAGCAAGTCGAAGAAGG TGCCAAGTTGTGCTGTTGGGTTGGTGATGTTCGTGAGGAAGAAAGGCGGGAACGGAATGGCTCTGCTGTTTGTGGTTGTGGTTTTGGCCGTGGTTGGGCT GCTGGGTCTGGTGGGTTCGCTGTATGGGGAGGTTCGGGGCACGGAGAGTGTCCGGAGGGTTTTGCATCTGCCCGATTCGTGGTTCAGGTTAGCTTAG
AA sequence Show only first row Show all	>Lus10005204 pacid=23145835 polypeptide=Lus10005204 locus=Lus10005204.g ID=Lus10005204.BGIv1.0 annot-version=v1.0 MATVATKNGGGVSRETKKSIEASTMFPGFRFSPSDVELISYYLKKKLDGEEKCVEVIPHVEICKHEPWDLPAKSVVQSETEWFFFSSRGRKYPNGSQSKR ATELGYWKATGKERSVRSGSAVIGTKRTLVFHIGRAPKGERTEWIMHEFCMHSGSNDSLVVCRLRRNVDFRGHHPTNDASEGNRVVEVNAAAESSKKTNS STSNSYSIEQIDSASNDFVCYQQPNVVTPPAVAETSNHFQLLNGFTQPDEDFFAEILNDDIIKLDETLLPTSLPHASADRVQGLQPSWMAAAPSNRRVKL ESRRRKKKIDQVAAAVEGEDEEAEKERRSKSKKVPSCAVGLVMFVRKKGGNGMALLFVVVVLAVVGLLGLVGSLYGEVRGTESVRRVLHLPDSWFRLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10005204 [exp]	0	1
AT2G23200			Protein kinase superfamily pro...		Lus10010443 [exp]	1.0	0.7414
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	7.1	0.6843
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	10.4	0.7290
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	11.7	0.7041
					Lus10031183 [exp]	14.7	0.7250
AT5G43400			Uncharacterised conserved prot...		Lus10016990 [exp]	15.4	0.6638
AT1G16760			Protein kinase protein with ad...		Lus10033340 [exp]	15.5	0.7132
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	15.7	0.6513
					Lus10016844 [exp]	17.9	0.6949
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	19.9	0.7070

Compare expression of checked genes

Lus10005204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.