Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36480 703 / 0 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT3G48780 126 / 4e-31 ATSPT1 serine palmitoyltransferase 1 (.1) AT5G23670 125 / 8e-31 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48790 105 / 8e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G04620 82 / 2e-16 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013317 [exp] 882 / 0 AT4G36480 774 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10036011 [exp] 122 / 1e-29 AT5G23670 877 / 0.0 long chain base2 (.1.2) Lus10016717 [exp] 119 / 2e-28 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10009024 [exp] 69 / 3e-12 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043800 [exp] 735 / 0 AT4G36480 738 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.015G034600 [exp] 732 / 0 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.012G104500 [exp] 128 / 9e-32 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 125 / 1e-30 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.001G126700 [exp] 70 / 2e-12 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10005205 pacid=23145839 polypeptide=Lus10005205 locus=Lus10005205.g ID=Lus10005205.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTGGGTTAAGCATAGTGAATAAGGCTGTACACTGGCTAACAGTGGCTTCAGATGCTCCTTCTGCTCGAGCAGTTGTTTTTGGAGTTCATA TTGGAGGTCATCTTTTCGTGGAGGGACTTTTACTATTTGTCATCCTTTTCCTGCTCTCTCAGAAAAGTTACAAGCCTCCTAAACGGCCTCTGACAAAAAA GGAAATAGATGAGTTGTGTGATGAATGGGTTCCACAGCCTCTTATTCCTACTATTACCGAAGAAATGCAACACGAGCCACCAGTGTTGGAAAGTGCTGCA GGCCCTCATACTGTTATCAACGGGAAAGACGTGGTGAATTTTGCTACTGCTGATTATCTAGGACTAATAGAACATGAGAAATTGCTGGATTCATGTACTA ATGCAATGGAAAAGTATGGTGTCGGTTCTTGTGGTCCTCGTGGTTTCTATGGAACTATCGATGTCCACCTTGATTGTGAGACCAGAATAGCAAATTTCTT GGGAACGCCAGACTCAATTCTCTATTCGTATGGTCTGTCCACTATGTTTAGCGCAATTCCATGTTTCTGCAAAAAGGGTGACATCATTGTTGTGGATGAG GGTGTCCACTGGGGAATACAAAATGGACTTCATCTGTCCAGAAGCACCATCGTGTATTTCAAGCACAATGACATGAAATCTCTACACGATACATTGGAGA AAATTACTGCGGATAATAAACGTGCTAAGAAGTTGCGGCGTTACATTGTTGTTGAATCTGTATACCAGAATTCTGGTCAAATAGCTCCGCTAGATGAGAT TATCAGACTGAAGGAGAAATACCGGTTCCGTGTTTTGCTGGACGAGAGCAACTCATTTGGAGTGTTGGGAAAGTCTGGAAAAGGTCTTACTGAATATTTC GGGGTCCCGGTTGAAAAGATTGATATCATAACTGCAGCTATGGGTCATGCGTTAGCAACTGAAGGAGGATTCTGCACTGGCAGCGCCAGAGTCATTGATC ACCAGCGATTGAGCAGCTCTGGCTATGTCTTTTCTGCATCTTTGCCCCCGTACCTTGCTAGTGCTGCTATCACTGCTATCGATATGATTGAGGACAATCC CGCCCTCATAACAAAGCTGAAAGAGAACATCTCTTTGCTGTTGAAAGGGTTGTCGGGCTTAGAGGGCCTCACAGTGACGAGCAACCCAGAATCTCCAATC GTTTATCTTAAGCTGGAGCATTCAACAGGTTCTAAAGCAGGCGACATCGAACTCCTCGAGAAAATCGCCGATCTCGCTCTGAAGGAAGACTCCGTTTTTA TAGTGACTTCGAAAAGGTCGACACTCGATAAGTGCCCGTTGCCAGTGGGAATCAGGTTGTTCGTCTCCGCTGGTCATTCGGAGACTGATCTTCGGATGGC ATCCGAAGCCCTGAAGAGAGTTTCGGCACTAGTGCTAAAAAACTTAATTGGGTTAGAATTGTTGCAGTCAAAATTCCAGATAGCTGAGCGACTTCCTATC GCACCGGATGGTCGATCAATTCCAACGCTTAATCATGTTAGAGCTAGATTCAGATTCCAAGGGGGGGTTTCGAACATCATTTACGACTCTAACGCTTGA
AA sequence Show only first row Show all	>Lus10005205 pacid=23145839 polypeptide=Lus10005205 locus=Lus10005205.g ID=Lus10005205.BGIv1.0 annot-version=v1.0 MASSGLSIVNKAVHWLTVASDAPSARAVVFGVHIGGHLFVEGLLLFVILFLLSQKSYKPPKRPLTKKEIDELCDEWVPQPLIPTITEEMQHEPPVLESAA GPHTVINGKDVVNFATADYLGLIEHEKLLDSCTNAMEKYGVGSCGPRGFYGTIDVHLDCETRIANFLGTPDSILYSYGLSTMFSAIPCFCKKGDIIVVDE GVHWGIQNGLHLSRSTIVYFKHNDMKSLHDTLEKITADNKRAKKLRRYIVVESVYQNSGQIAPLDEIIRLKEKYRFRVLLDESNSFGVLGKSGKGLTEYF GVPVEKIDIITAAMGHALATEGGFCTGSARVIDHQRLSSSGYVFSASLPPYLASAAITAIDMIEDNPALITKLKENISLLLKGLSGLEGLTVTSNPESPI VYLKLEHSTGSKAGDIELLEKIADLALKEDSVFIVTSKRSTLDKCPLPVGIRLFVSAGHSETDLRMASEALKRVSALVLKNLIGLELLQSKFQIAERLPI APDGRSIPTLNHVRARFRFQGGVSNIIYDSNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	0	1
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	2.4	0.8846
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	4.2	0.8775
AT3G62220			Protein kinase superfamily pro...		Lus10038042 [exp]	7.4	0.8512
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	15.7	0.8206
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	16.2	0.8731
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	17.0	0.8624
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	18.1	0.8262
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	19.4	0.8346
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	21.9	0.8651
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10009987 [exp]	26.9	0.8009

Compare expression of checked genes

Lus10005205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.