Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36026 77 / 5e-17 OFP Ovate family protein (.1) AT3G52525 75 / 1e-16 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36030 63 / 3e-13 unknown protein AT2G18500 67 / 7e-13 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT5G19650 60 / 9e-11 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G30400 61 / 2e-10 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT1G06920 59 / 5e-10 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G58360 58 / 7e-10 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G01840 56 / 3e-09 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT4G18830 54 / 3e-08 OFP ATOFP5, OFP5 ovate family protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013318 [exp] 274 / 5e-93 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10021302 [exp] 86 / 6e-20 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10016978 [exp] 80 / 5e-18 AT3G52525 114 / 4e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10041730 [exp] 66 / 1e-12 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10011092 [exp] 65 / 4e-12 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 64 / 1e-11 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10025241 [exp] 62 / 5e-11 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 62 / 8e-11 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 60 / 2e-10 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161700 [exp] 92 / 1e-22 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.004G200500 [exp] 88 / 2e-21 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.016G072800 [exp] 86 / 2e-20 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.006G205400 [exp] 86 / 2e-20 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.007G028000 [exp] 67 / 1e-12 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 66 / 2e-12 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.005G125200 [exp] 65 / 6e-12 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.018G080100 [exp] 64 / 7e-12 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.004G062100 [exp] 64 / 2e-11 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.006G156176 [exp] 63 / 2e-11 AT5G19650 104 / 8e-27 ovate family protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10005206 pacid=23145832 polypeptide=Lus10005206 locus=Lus10005206.g ID=Lus10005206.BGIv1.0 annot-version=v1.0 ATGAAACCAAACGATCATCTCAACAACGATGCAAACTCAAACAGTACTAGTGATTGCACCAAGAAGAAGACGAAGATCAAGAATCTCTTCATCATCGGCC GCCTCGCCGTGTTCCGATCCTCCTCTTCCTCCAATACCTTCTGCGGTTGCGGCCTCTCCGACGTCCACGATCCTTCCTTGCCGCCGCTAACATCCTCCAG GATACCTCCGTCGCCGGCCTCCAGCATCAACATCCTCGCCACACTTCGTAAACACCCGAACTCCCCTGCCGCCAGCACAATTCCCGGTTACGCCGACGAC GAAAGTGAATATGAAGAAACAGGTTATAATCGGCGAGATCTACGCACCGATTCATCTTACACCACAAGTATGACCGCCACCACGACGACGACAACGGCGA CGGCTTGTTCCTCCTCCTACTCGTCTGCTTCTTCTTCTAGTAACGGATCTGATCGAAAACGGTCGACGTGGCGATCAGGATCTGTGATCGGGAGCAGTAT CGCGGTGGTGAAGGATTCTGAAGATCCGTACTGTGATTTTAGAGATTCGATGATGCGGATGGTGGAGGAGAAGGGGATATACAGTCGGAGCGGGCTTGAA GAGCTTCTCAAGCGGTTCTTGGAGCTAAATTCTCCCTGTTACCATTCCGTAATCGTCAGAGCCTTCACTCAGATCTGGAACCAAGTTGTCGTCGGCGACA ACGTCAGTCATCACGCCAAGCACGGTCGCCGTTGA
AA sequence Show only first row Show all	>Lus10005206 pacid=23145832 polypeptide=Lus10005206 locus=Lus10005206.g ID=Lus10005206.BGIv1.0 annot-version=v1.0 MKPNDHLNNDANSNSTSDCTKKKTKIKNLFIIGRLAVFRSSSSSNTFCGCGLSDVHDPSLPPLTSSRIPPSPASSINILATLRKHPNSPAASTIPGYADD ESEYEETGYNRRDLRTDSSYTTSMTATTTTTTATACSSSYSSASSSSNGSDRKRSTWRSGSVIGSSIAVVKDSEDPYCDFRDSMMRMVEEKGIYSRSGLE ELLKRFLELNSPCYHSVIVRAFTQIWNQVVVGDNVSHHAKHGRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	0	1
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	2.0	0.8657
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	3.2	0.8744
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	6.2	0.8629
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	7.0	0.8426
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	8.1	0.8442
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10021900 [exp]	10.4	0.7849
AT1G17080			Ribosomal protein L18ae family...		Lus10005580 [exp]	10.6	0.8376
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	10.9	0.8192
AT2G44600			unknown protein		Lus10043351 [exp]	11.2	0.7827
AT5G03460			unknown protein		Lus10014419 [exp]	13.0	0.8525

Compare expression of checked genes

Lus10005206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.