Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27290 161 / 2e-50 Protein of unknown function (DUF1279) (.1) AT2G20940 39 / 0.0007 Protein of unknown function (DUF1279) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013320 [exp] 258 / 1e-88 AT2G27290 186 / 2e-60 Protein of unknown function (DUF1279) (.1) Lus10034474 [exp] 40 / 0.0003 AT2G20940 134 / 1e-41 Protein of unknown function (DUF1279) (.1) Lus10025069 [exp] 40 / 0.0005 AT2G20940 134 / 4e-40 Protein of unknown function (DUF1279) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G161800 [exp] 159 / 2e-49 AT2G27290 153 / 6e-47 Protein of unknown function (DUF1279) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06916 [flax] [poplar] DUF1279 Protein of unknown function (DUF1279)
Representative CDS sequence Show only first row Show all	>Lus10005208 pacid=23145838 polypeptide=Lus10005208 locus=Lus10005208.g ID=Lus10005208.BGIv1.0 annot-version=v1.0 ATGTCAGCAACTCTACAAATTGTTAACACTAGTTTCTTCTGCAACTCCACCGCTTCTCTTAAACATCCAAAATCCATCGTTTCCGCCAAGTTCACAGTCA GAGCAGTCCAGAATCAGAAAACCGGACTGAAAACCCCAACCCCATCTTCCCCATCTTCCTCACCTGAAGAAATCACCCAGAAGTACGGCCTAGAAGCTGG CCTTTGGAAGATATTCAGCTCCAAGGATGAAGATAACAAGGGTGAAGAACAAAAATCCAAGGGAGACCAAGCTAAGCAACTTCTAACCAAGTATGGAGGA GCTTACCTCGCTACATCCATCACCCTCTCCATCATCTCCTTCTCCCTCTGCTATGCACTCATCAACGCCGGCGTTGATGTTCAAGCTCTCCTTCTCAAGG TTGGGATTTCCACAGATGCTACTGGAGAGAAAGTTGGCACCTTTGCTTTGGCGTATGCTGCTCATAAAGCTGCATCTCCGATCAGGTTCCCTCCCACCGT GGCGCTTACTCCGATTGTAGCTGGTTGGATCGGTAAGAAGAAGGCTGAACAACAGAAGTAG
AA sequence Show only first row Show all	>Lus10005208 pacid=23145838 polypeptide=Lus10005208 locus=Lus10005208.g ID=Lus10005208.BGIv1.0 annot-version=v1.0 MSATLQIVNTSFFCNSTASLKHPKSIVSAKFTVRAVQNQKTGLKTPTPSSPSSSPEEITQKYGLEAGLWKIFSSKDEDNKGEEQKSKGDQAKQLLTKYGG AYLATSITLSIISFSLCYALINAGVDVQALLLKVGISTDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKKAEQQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27290			Protein of unknown function (D...		Lus10005208 [exp]	0	1
AT2G27290			Protein of unknown function (D...		Lus10013320 [exp]	1.0	0.9630
AT1G64680			unknown protein		Lus10001667 [exp]	5.7	0.9337
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	6.3	0.9242
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	6.7	0.9323
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	7.5	0.9317
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013434 [exp]	7.5	0.9044
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	10.4	0.9174
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	12.6	0.9122
AT1G21065			unknown protein		Lus10016049 [exp]	12.6	0.9039
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	13.4	0.9129

Compare expression of checked genes

Lus10005208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.