Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22220 396 / 3e-136 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT2G36010 374 / 3e-127 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT1G47870 245 / 3e-78 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT5G14960 66 / 8e-12 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G48160 62 / 2e-10 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT3G01330 61 / 4e-10 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013321 [exp] 498 / 1e-176 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10016972 [exp] 399 / 2e-137 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 384 / 7e-131 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10004217 [exp] 380 / 6e-130 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 373 / 9e-127 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10033151 [exp] 248 / 5e-79 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Lus10032439 [exp] 60 / 9e-10 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 60 / 9e-10 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 52 / 4e-07 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G200800 [exp] 486 / 2e-171 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.009G161900 [exp] 482 / 7e-170 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.006G205100 [exp] 418 / 6e-145 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 382 / 7e-131 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.002G023400 [exp] 244 / 3e-77 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.015G070300 [exp] 62 / 2e-10 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 61 / 4e-10 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005209 pacid=23145842 polypeptide=Lus10005209 locus=Lus10005209.g ID=Lus10005209.BGIv1.0 annot-version=v1.0 ATGTCAGCGAAAGGGGGAAAAGCTCCCAAGGTATCCAGGCTCTCGAGGAGCAAGAAATCAGCACCAAAGAATGCCAATGCAAATATCGGTTCCCCGAGCA ATAATCTTACTCCAACTGGTCCTTGTCGATACGACAGCTCTCTAGGTCTCTTGACAAAGAAATTCATCAATTTGATCAAACATGCTGAAGATGGCATGCT TGATCTCAATAAAGCTGCTGACACTTTAGAGGTTCAGAAAAGGCGCATATATGACATAACAAATGTATTAGAAGGAATTGGCCTGATAGAAAAGAATCTC AAGAACAGAATTCAGTGGAAGGGAGTTGATGTCTCGCGTCCAGGAGAGGCAGATGAGAGTGCTACTAGCTTGCAGGCAGAAGTGGAAAATCTTGCAATTG AGGAACGTAGATTGGATGAACAGATAAGGGATATGCAAGAAAGGCTGAGAGACCTTAGTGAGGATGAGAACAACCAAAAGTGGCTTTTTGTCACCGAGGA CGACATCAAGAACATACCTTGTTTCCAGAATGAAACACTTATAGCTATCAAAGCTCCACATGGGACTACATTGGAGGTTCCTGATCCTGACGAGGCTGCT GACTATCCACAAAGGCGTTACAAGATCGTGCTACGAAGCACGATGGGTCCTATAGACGTCTATCTTGTCAGCCAATTCGAAGAGAAATTTGAGGAGATCG ATGGCGTCGAACCACCTCCTCCTCCTAGCTATCCTTCTAGCTCCAGCCTTAACGAGAATCCTGCAACCGCATCGGTTGCAGTAGAGAATAGAGGTAAGGA AATCGAAAATGCAGAGCAAGATCTTAATCCTCCACAGGATTATTTCAGCGGGATCATGAAGATTGTTCCTACTGACGTCGATTGTGCTTCAGATTACTGG CTTTTGTCAGACGCCGGTGTCAGCATCACAGATATGTGGGGAACCGATCCTGGGTTCGAATGGGACGAGTTTGGCGCACTCCATGAAGAATATGCCATGG AAAATGTCAGCATACCGCAGCCCCAAACTCCACCCTCGAATCCAACAGAGCCACCTTCTGCTGCAAACACTACACCACAGTGA
AA sequence Show only first row Show all	>Lus10005209 pacid=23145842 polypeptide=Lus10005209 locus=Lus10005209.g ID=Lus10005209.BGIv1.0 annot-version=v1.0 MSAKGGKAPKVSRLSRSKKSAPKNANANIGSPSNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGMLDLNKAADTLEVQKRRIYDITNVLEGIGLIEKNL KNRIQWKGVDVSRPGEADESATSLQAEVENLAIEERRLDEQIRDMQERLRDLSEDENNQKWLFVTEDDIKNIPCFQNETLIAIKAPHGTTLEVPDPDEAA DYPQRRYKIVLRSTMGPIDVYLVSQFEEKFEEIDGVEPPPPPSYPSSSSLNENPATASVAVENRGKEIENAEQDLNPPQDYFSGIMKIVPTDVDCASDYW LLSDAGVSITDMWGTDPGFEWDEFGALHEEYAMENVSIPQPQTPPSNPTEPPSAANTTPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	0	1
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	3.9	0.8429
AT4G08630			unknown protein		Lus10001720 [exp]	4.0	0.8360
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10013321 [exp]	6.9	0.8324
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	13.4	0.7853
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	14.3	0.7902
AT2G40630			Uncharacterised conserved prot...		Lus10030527 [exp]	14.7	0.8010
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	17.6	0.7354
AT1G05910			cell division cycle protein 48...		Lus10025576 [exp]	20.0	0.8111
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	20.8	0.7808
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	21.7	0.8304

Compare expression of checked genes

Lus10005209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.