Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65730 338 / 3e-110 YSL7 YELLOW STRIPE like 7 (.1) AT1G48370 306 / 2e-97 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 304 / 7e-97 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G45450 270 / 1e-89 Oligopeptide transporter OPT superfamily protein (.1) AT5G53550 258 / 1e-79 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 256 / 5e-79 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT5G41000 251 / 7e-77 YSL4 YELLOW STRIPE like 4 (.1) AT3G27020 251 / 9e-77 YSL6 YELLOW STRIPE like 6 (.1) AT4G24120 249 / 3e-76 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013323 [exp] 405 / 2e-135 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 380 / 3e-126 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 377 / 6e-125 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10008836 [exp] 262 / 4e-81 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 262 / 8e-81 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032950 [exp] 259 / 3e-80 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 258 / 7e-80 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10032024 [exp] 254 / 2e-78 AT3G27020 1055 / 0.0 YELLOW STRIPE like 6 (.1) Lus10035194 [exp] 254 / 5e-78 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G151232 [exp] 325 / 2e-111 AT3G17650 343 / 3e-115 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G151600 [exp] 332 / 1e-107 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G151800 [exp] 330 / 8e-107 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 328 / 2e-106 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G150500 [exp] 326 / 3e-105 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 323 / 5e-104 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.011G055224 [exp] 258 / 8e-80 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.005G093800 [exp] 256 / 2e-78 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G327300 [exp] 254 / 4e-78 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.001G082400 [exp] 245 / 1e-74 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10005210 pacid=23145826 polypeptide=Lus10005210 locus=Lus10005210.g ID=Lus10005210.BGIv1.0 annot-version=v1.0 ATGCTCCAGAAGTCCGGAATGCTCCAACAACCTTTCACTCGCCAGGAGAATACCGTCATTCAGACCTGCGTCGTCGCCACCTCCGGCATCGCCTTCAGCG GTGGTTTTGGAAGTTACCTATTCGGAATGAGTGAAGTTGTGGCCAAACAATCAACGGAAGCTAACAACGCTCAGAACATCAAAGACCCGTCACTGGGATG GATGATTAGCTTCCTTTTTGTCGTCAGCTTTCTTGGCCTATTCTCTGTAGTTCCTCTACGGAAGATTATGGTCATAGACTTCAAATTGACATATCCAAGT GGCACTGCCACTGCTCACCTTATCAACAGTTTTCACACTCCTCAGGGTGCCAAGCTAGCAAAGAAGCAAGTGAGAGCATTGGGGAAGTTCTTCTCCTTCA GCTTCTTGTGGGGCTTCTTCCAATGGTTCTTCACTGCTGGGGATGGCTGTGGATTTGTCAACTTTCCTACTTTGTGCCTCCAGGCCTATGAGACACAAAG AGGTAACTGGTACTCTGCGGAGCTACCCCAAAGCAGTCTTTCTGGCCTGCAAGGTTACAAGATCTTCATTGCTATAGCCATGATCCTTGGCGACGGAGTG TACAATTTCCTCAAGGACTTCAAGACAGGCTACATGACGCTAGCATCCCCACGTTCAATGTTGATCAGCCAAGTGATCGGAACAGCAATGGGCTGCTTGA TAGCTCCCTGCGTCTTCTGGCTATTCTACAAGGCCTTCCACGACCTCGGCGTACCGGGTTCCGAGTATCCAGCACCTTACGCACTCGTCTACCGCAACAT GTCCATCTTAGGAGTAGAAGGCTTCTCCGCCCTACCAAAGCACTGCCTGATGCTCTGCTGCGTATTCTTCTTCGCCGCCATGGCAGTCAACGGAGTTCGA GACCTCGTTGGGACCAAGTGGGCCAAGTACATACCGCTTCCTATGGCGATGGCCATCCCTTTCTACCTCGGCGGGTACTTTGCGATCGACATGTGCGTCG GGAGCTTGATTCTGTACGTGTGGGGGAAAGTGAACAAGGAGAAGGCGGATGCGTTTGGACCCGCTGTGGCTTCCGGGTTGATCTGTGGAGATGGGATTTG GACTTTGCCTAGCTCGATACTTGCATTGTCTGGTGTGAATCCGCCGATTTGTATGAAGTTCTTGTCCAGGAAGAGTAACACAAAGGTTGATGCTTTCTTG GGATCTTGA
AA sequence Show only first row Show all	>Lus10005210 pacid=23145826 polypeptide=Lus10005210 locus=Lus10005210.g ID=Lus10005210.BGIv1.0 annot-version=v1.0 MLQKSGMLQQPFTRQENTVIQTCVVATSGIAFSGGFGSYLFGMSEVVAKQSTEANNAQNIKDPSLGWMISFLFVVSFLGLFSVVPLRKIMVIDFKLTYPS GTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFLWGFFQWFFTAGDGCGFVNFPTLCLQAYETQRGNWYSAELPQSSLSGLQGYKIFIAIAMILGDGV YNFLKDFKTGYMTLASPRSMLISQVIGTAMGCLIAPCVFWLFYKAFHDLGVPGSEYPAPYALVYRNMSILGVEGFSALPKHCLMLCCVFFFAAMAVNGVR DLVGTKWAKYIPLPMAMAIPFYLGGYFAIDMCVGSLILYVWGKVNKEKADAFGPAVASGLICGDGIWTLPSSILALSGVNPPICMKFLSRKSNTKVDAFL GS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10005210 [exp]	0	1
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	6.2	0.7197
AT5G25530			DNAJ heat shock family protein...		Lus10008109 [exp]	11.2	0.7001
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	12.0	0.7210
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10002397 [exp]	17.3	0.7067
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	23.6	0.7038
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	26.0	0.7090
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	28.8	0.7068
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	31.6	0.7006
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	35.1	0.6783
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	37.7	0.6952

Compare expression of checked genes

Lus10005210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.