Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 178 / 7e-54 Eukaryotic aspartyl protease family protein (.1) AT2G42980 96 / 6e-23 Eukaryotic aspartyl protease family protein (.1) AT2G03200 92 / 1e-21 Eukaryotic aspartyl protease family protein (.1) AT5G45120 90 / 6e-21 Eukaryotic aspartyl protease family protein (.1) AT3G59080 88 / 2e-20 Eukaryotic aspartyl protease family protein (.1.2) AT3G25700 82 / 3e-18 Eukaryotic aspartyl protease family protein (.1.2) AT4G16563 79 / 3e-17 Eukaryotic aspartyl protease family protein (.1) AT1G09750 74 / 2e-15 Eukaryotic aspartyl protease family protein (.1) AT3G61820 74 / 3e-15 Eukaryotic aspartyl protease family protein (.1) AT5G02190 71 / 2e-14 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013324 [exp] 374 / 6e-134 AT3G52500 177 / 2e-53 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 170 / 1e-50 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 167 / 1e-49 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 150 / 1e-43 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10020759 [exp] 100 / 7e-26 AT3G59080 386 / 1e-133 Eukaryotic aspartyl protease family protein (.1.2) Lus10007466 [exp] 103 / 1e-25 AT4G16563 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 102 / 3e-25 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 101 / 8e-25 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10028941 [exp] 99 / 4e-24 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162400 [exp] 211 / 9e-67 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 184 / 3e-56 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.016G071900 [exp] 160 / 4e-47 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 97 / 2e-23 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 96 / 4e-23 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 92 / 9e-22 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 90 / 8e-21 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.003G076300 [exp] 89 / 1e-20 AT4G16563 484 / 2e-168 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 87 / 6e-20 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G158600 [exp] 85 / 4e-19 AT4G16563 494 / 5e-172 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10005211 pacid=23145830 polypeptide=Lus10005211 locus=Lus10005211.g ID=Lus10005211.BGIv1.0 annot-version=v1.0 ATGATTTTAAGTTACACTCCGTTCGTTAAGAATCCGGTTAATGTGAAAGGTAAGCCGGATTATTCGGTCTATTACTACGTCGGCCTGCGGCGAATCAGCG TAGGAGGCCGGCGCGTGGAAATACCGTACAGGTACCTAGCACCTCCTAACAATAACGGAAGCGGAGGGACGATCGTCGATTCGGGAACGACGTTTACGTA CATGACGCGCGGGGTGTTCGATCCGGTGAGCAGCGAGCTGGTAGCTCAGATGAGGAGGAATCAGAACTACAGCAGATCACCCGCCGCCGAGGCCGCGAGT GGGCTAAGACCGTGTTTCCGGATTCGAGGTGGGAGGAAGAAAGGGTCGGTGTCGGCGTTTCCGGAGCTGAGGTTCCACTTTAAAGGCGGCGGCGACATGG TATTTCCGATGGAGAATTACGTTGCTTACGTCGGTTCTGGTGAGGGAACGGCGGCGTGTTTGGCGGTGGTGACGGACGGAATGGAAGGAAAAGGAGGAAG TGGGCCGAGCGTGATAATAGGGAATTACCAGATGCAGAATTTCCACGTGGAGTTTGATTTGAAGAAGCAGAGATTTGGATTCAAGCAGGAAGCTTGTAAC CAATGA
AA sequence Show only first row Show all	>Lus10005211 pacid=23145830 polypeptide=Lus10005211 locus=Lus10005211.g ID=Lus10005211.BGIv1.0 annot-version=v1.0 MILSYTPFVKNPVNVKGKPDYSVYYYVGLRRISVGGRRVEIPYRYLAPPNNNGSGGTIVDSGTTFTYMTRGVFDPVSSELVAQMRRNQNYSRSPAAEAAS GLRPCFRIRGGRKKGSVSAFPELRFHFKGGGDMVFPMENYVAYVGSGEGTAACLAVVTDGMEGKGGSGPSVIIGNYQMQNFHVEFDLKKQRFGFKQEACN Q

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10005211 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10005212 [exp]	35.6	0.5861
AT3G13440			S-adenosyl-L-methionine-depend...		Lus10008072 [exp]	180.9	0.4871

Compare expression of checked genes

Lus10005211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.