Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52500 134 / 2e-36 Eukaryotic aspartyl protease family protein (.1) AT5G45120 62 / 7e-11 Eukaryotic aspartyl protease family protein (.1) AT3G02740 53 / 6e-08 Eukaryotic aspartyl protease family protein (.1) AT3G25700 51 / 3e-07 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 49 / 2e-06 Eukaryotic aspartyl protease family protein (.1) AT1G79720 49 / 2e-06 Eukaryotic aspartyl protease family protein (.1) AT5G43100 49 / 3e-06 Eukaryotic aspartyl protease family protein (.1) AT1G01300 48 / 4e-06 Eukaryotic aspartyl protease family protein (.1) AT2G42980 47 / 8e-06 Eukaryotic aspartyl protease family protein (.1) AT3G42550 47 / 9e-06 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013325 [exp] 327 / 2e-113 AT3G52500 159 / 2e-45 Eukaryotic aspartyl protease family protein (.1) Lus10021293 [exp] 144 / 6e-41 AT3G52500 369 / 1e-125 Eukaryotic aspartyl protease family protein (.1) Lus10016967 [exp] 140 / 1e-38 AT3G52500 330 / 2e-109 Eukaryotic aspartyl protease family protein (.1) Lus10004204 [exp] 137 / 2e-37 AT3G52500 457 / 2e-158 Eukaryotic aspartyl protease family protein (.1) Lus10029408 [exp] 135 / 2e-36 AT3G52500 466 / 5e-162 Eukaryotic aspartyl protease family protein (.1) Lus10018286 [exp] 59 / 1e-09 AT5G45120 520 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 57 / 5e-09 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 57 / 5e-09 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 57 / 6e-09 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G071900 [exp] 150 / 1e-42 AT3G52500 491 / 8e-172 Eukaryotic aspartyl protease family protein (.1) Potri.009G162400 [exp] 147 / 4e-41 AT3G52500 396 / 1e-134 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 137 / 1e-37 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.012G118000 [exp] 67 / 2e-12 AT5G45120 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G113100 [exp] 60 / 3e-10 AT5G45120 588 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 49 / 1e-06 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 49 / 2e-06 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 47 / 9e-06 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 47 / 1e-05 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G002100 [exp] 46 / 1e-05 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005212 pacid=23145834 polypeptide=Lus10005212 locus=Lus10005212.g ID=Lus10005212.BGIv1.0 annot-version=v1.0 ATGGCGAATTCCTTCATCTTCTTCTTCCTCCTCCTCCTCTGTTTCTTCACCCTCTCTTCATCTTCCCAAATCTCCTTCCACCTCCACCACCGCCACCAAC CAAATCTCCACCACCTCAATCTCCTAGCAAACTCATCCCTCTCCAGATCCCGCCACATCAAACACTCCTCTTCCTCTAACTTCGCTGTCAAAACTCAGCT CACGCCTCGCAGCTACGGCGGATACTCAATCTCTCTTTCATTCGGCACTCCGCCGCAGACATTACCTTTTGTCGTCGACACTTCCAGCAGCTTCGTCTGG TCTCCTTGCACCACTCACTACCGCTGCAAGAACTGCTCTTTCCCTTCCCCCCCCACCGACATTCCGTCTTTTCTTCCGGTCCTCTCCTCATCGTCGAAGA TCGTCGGGTGTAGAAACCCCAAATGCTCATGGATCCATGGCCGATTAGACCCCTGCGGCGGCGATTGCGGCTCCGGGAACGCCCCCCGCCGCTACTGCTC CCAGATCTGCCCGCCGTATCTCGTCTCCTACGGCTCCGGCACTGCCACCGGAGGAATCGCCCTCTCGGAAACTCTGCGGCTTCGAAACGTCACCGTTTCC AATTTCCTCCAACGGAGTACTCGCCGTCTCCGAAACTCTGCGGCTGCGAAACATCACCGTTTCGAATTTCCTCATCGGATGCTCTGTTTTCTCTTCGAAA CAGCCCGCCGGGATCGCCGGACTCGGTCGGGGGAGGTCGTCGCTGGCAAGTCAACTCGGGGTCACGAAATTCTCCTACTGCTTGCTGTCTCATAA
AA sequence Show only first row Show all	>Lus10005212 pacid=23145834 polypeptide=Lus10005212 locus=Lus10005212.g ID=Lus10005212.BGIv1.0 annot-version=v1.0 MANSFIFFFLLLLCFFTLSSSSQISFHLHHRHQPNLHHLNLLANSSLSRSRHIKHSSSSNFAVKTQLTPRSYGGYSISLSFGTPPQTLPFVVDTSSSFVW SPCTTHYRCKNCSFPSPPTDIPSFLPVLSSSSKIVGCRNPKCSWIHGRLDPCGGDCGSGNAPRRYCSQICPPYLVSYGSGTATGGIALSETLRLRNVTVS NFLQRSTRRLRNSAAAKHHRFEFPHRMLCFLFETARRDRRTRSGEVVAGKSTRGHEILLLLAVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52500			Eukaryotic aspartyl protease f...		Lus10005212 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	20.5	0.7400
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10014085 [exp]	24.2	0.7242
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	26.6	0.7109
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	29.7	0.7274
AT3G52500			Eukaryotic aspartyl protease f...		Lus10005211 [exp]	35.6	0.5861
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	63.9	0.6592
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10004879 [exp]	65.8	0.6048
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	72.4	0.6628
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10036266 [exp]	103.7	0.6212
AT2G12462			unknown protein		Lus10001679 [exp]	108.9	0.6345

Compare expression of checked genes

Lus10005212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.