Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 220 / 1e-64 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT5G42540 219 / 5e-64 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G75660 216 / 5e-63 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013326 [exp] 358 / 2e-116 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 286 / 2e-90 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10020397 [exp] 224 / 2e-65 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 218 / 2e-63 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10015946 [exp] 212 / 1e-61 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10004119 [exp] 209 / 4e-61 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 171 / 3e-47 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10024327 [exp] 160 / 1e-43 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10005215 [exp] 134 / 1e-37 AT5G42540 157 / 5e-44 exoribonuclease 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237500 [exp] 224 / 1e-65 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.013G070200 [exp] 212 / 2e-61 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G048900 [exp] 211 / 2e-61 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G035600 [exp] 199 / 4e-57 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.002G024100 [exp] 195 / 1e-55 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF03159 [flax] [poplar] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Lus10005213 pacid=23145825 polypeptide=Lus10005213 locus=Lus10005213.g ID=Lus10005213.BGIv1.0 annot-version=v1.0 ATGGGAGTCCCTTCGTTTTACAGATGGCTAGTAAGAAAGTACCCAAACATCGTCGTCAAAGCCCATCTTCAACAAGAACAAGACTCTGTTCCAAATGGGT TTGTTGATCAGCAGTTCGACAATCTTTACCTGGATATGAACAACATCATCCACCCTTGCTTCCACCCTGAAGATCCCTCCCATCCATTCCCTCCGATAAC GTTTGGCCAAGTCCACGCTGCCATGTTTGAATATATTGATCATATATTCAGCATAGTTAGGCCAAGGAAGCTGTTGTACTTGGCCATAGATGGAGTTGGT CCGCGTGCTAAGATGAACCAGCAGCGAGCTAGGCGGTTTCGGTCTGCTAAGGATAACGATGCAATGCAGCTCTCTAAGAAGCTCGAACAATATGTAACAC TCAAGATGGAGACTTGTCCCGGATGGAAGGACATTAAGGTTGTACTTTCGGATGCGAATGTTCCTGGTGAAGGTGAACATAAGATCATGTCCTTCATTCG TCACCAGCGTAACCTTCCTGGATATAATCCGAATACTCGACATTGTATCTATGGCCTTGGTGCTCTTGATCTGCTGATGAATGTTTACAAGGAACATTTC AAAAGCCTTGGTGGCTACTTAGTAGATATGCAAAGGGTTCAGGATCCGAAAAATGGGTTCATCAAGCTGAAGCGAGTCGAGAAGTTTATACTTGAGGTTG GGAAATTCGAGGATAGAATTTTCAAGAAACGATCGGAACTCAAAGATAGAATGATTGTTAAGATTGCTGCTACTTTCTCAGCTCCTGTGAGTCGACCGAT ACAAGGAATATGCGAGCTTCCTTTCGTTGATGGACAACTGCTTCTGGATGAGGTAAACAAGGTTGAGAAGGAACTCAAAGCTCATGAAATTGAGAGAAAC AAACAGAATACTGAGAGGCTCTACATGAGAACAAGCAGCTTTGCAGATGATCAGCTAGTCTTACTTTTCTCATCCCCAAGTGAAAAGAAACTTGATATTA CTCAATGGTATGTACATTTACTATATATGATTTGA
AA sequence Show only first row Show all	>Lus10005213 pacid=23145825 polypeptide=Lus10005213 locus=Lus10005213.g ID=Lus10005213.BGIv1.0 annot-version=v1.0 MGVPSFYRWLVRKYPNIVVKAHLQQEQDSVPNGFVDQQFDNLYLDMNNIIHPCFHPEDPSHPFPPITFGQVHAAMFEYIDHIFSIVRPRKLLYLAIDGVG PRAKMNQQRARRFRSAKDNDAMQLSKKLEQYVTLKMETCPGWKDIKVVLSDANVPGEGEHKIMSFIRHQRNLPGYNPNTRHCIYGLGALDLLMNVYKEHF KSLGGYLVDMQRVQDPKNGFIKLKRVEKFILEVGKFEDRIFKKRSELKDRMIVKIAATFSAPVSRPIQGICELPFVDGQLLLDEVNKVEKELKAHEIERN KQNTERLYMRTSSFADDQLVLLFSSPSEKKLDITQWYVHLLYMI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10005213 [exp]	0	1
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	3.0	0.9900
					Lus10012394 [exp]	3.2	0.9843
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	4.2	0.9900
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	5.2	0.9900
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	6.0	0.9900
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	6.7	0.9900
					Lus10033149 [exp]	7.3	0.9900
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	7.9	0.9900
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	8.5	0.9900
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	9.0	0.9900

Compare expression of checked genes

Lus10005213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.