Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27260 133 / 5e-38 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52460 85 / 3e-19 hydroxyproline-rich glycoprotein family protein (.1) AT2G35980 63 / 9e-12 NHL10, YLS9, ATNHL10 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G08160 61 / 5e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22870 57 / 1e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 55 / 6e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G05220 53 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 52 / 7e-08 NHL2 NDR1/HIN1-like 2 (.1) AT1G13050 45 / 8e-06 unknown protein AT3G26350 46 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013329 [exp] 241 / 5e-82 AT2G27260 89 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10034173 [exp] 199 / 1e-63 AT2G27260 149 / 2e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043411 [exp] 196 / 1e-62 AT2G27260 148 / 6e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021284 [exp] 86 / 2e-19 AT3G52460 164 / 1e-48 hydroxyproline-rich glycoprotein family protein (.1) Lus10021404 [exp] 80 / 5e-18 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 77 / 7e-17 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 61 / 4e-11 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10041350 [exp] 55 / 1e-09 AT5G22870 94 / 3e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 55 / 6e-09 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218300 [exp] 145 / 1e-42 AT2G27260 94 / 6e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019800 [exp] 139 / 4e-40 AT2G27260 96 / 1e-23 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 94 / 1e-22 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G003800 [exp] 82 / 8e-19 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071200 [exp] 81 / 6e-18 AT3G52460 123 / 2e-33 hydroxyproline-rich glycoprotein family protein (.1) Potri.006G204300 [exp] 67 / 5e-13 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 63 / 9e-12 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218201 [exp] 58 / 6e-10 ND / Potri.009G019900 [exp] 54 / 1e-08 ND / Potri.003G039400 [exp] 53 / 3e-08 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10005216 pacid=23145822 polypeptide=Lus10005216 locus=Lus10005216.g ID=Lus10005216.BGIv1.0 annot-version=v1.0 ATGGAAGCCGCTACCGGATACCCCGTCCCACCCAACCAACAGCAGCAGCCCCCAAACGGATACCCTCCGCCGCCTCCACCTGCCGGCACCGCCTATCCGT ACCAAGCTCCCCAACAGCCTTCAAACCCTTACTACCACAACAATCCATCGCAAGGTCCCGTCTACACTCCCCAGCGGCCTACTCTCTACCGCCGATTAAT CGGGATTCTCATCATCGTCTCCATCCTAGTCCTCACCGCACTCCTAATCACCTGGATCGCAATCCGCCCCCGCGCCCCGGAATTCCGCCTCACTTCCCTA ACCCTAACGAACTTCAACTACTCCGGCACCCAGCTCTCCGGTGACTGGGCCGCTCGATTCGAGGTGTACAATCCGAACAAGAAGATGAGCGTCGAGTACG ATCCGGTCACGTCGTCCGTGTTCTACCATAGGGAGTTTCTCACGGAGACGCGGATCGGACCGTTCAATCAGCAGGGCAGGAATCTGACGGCTGTGGAGGC TCGGTACTCCGTTGTCAATACGTTCGTTGATAGGTGGGTGACGGACGAGGTTGACAAGGAGAAGAGGAAGCTTGGCTCCGTGGCTTTCGATTTGAGGGTT GTGGCTGGGGCAGGGTTTAAGTATGGTGGCTTTAGAGCCAGGAGACGAGTTCTTCGTGTTCACTGCGACGATTTGACTGTGGTGATTCGTGGTAATGGTG GGAACATGTCCAATGTTCCCAAACGATGTTACGTTTATGCTTGA
AA sequence Show only first row Show all	>Lus10005216 pacid=23145822 polypeptide=Lus10005216 locus=Lus10005216.g ID=Lus10005216.BGIv1.0 annot-version=v1.0 MEAATGYPVPPNQQQQPPNGYPPPPPPAGTAYPYQAPQQPSNPYYHNNPSQGPVYTPQRPTLYRRLIGILIIVSILVLTALLITWIAIRPRAPEFRLTSL TLTNFNYSGTQLSGDWAARFEVYNPNKKMSVEYDPVTSSVFYHREFLTETRIGPFNQQGRNLTAVEARYSVVNTFVDRWVTDEVDKEKRKLGSVAFDLRV VAGAGFKYGGFRARRRVLRVHCDDLTVVIRGNGGNMSNVPKRCYVYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	1.0	0.9449
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	1.4	0.9329
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	2.0	0.9127
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	2.4	0.9183
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10041489 [exp]	3.2	0.9090
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	3.5	0.9086
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	4.6	0.9060
AT5G35090			unknown protein		Lus10001931 [exp]	6.0	0.8924
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	6.3	0.8936
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	6.5	0.8876

Compare expression of checked genes

Lus10005216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.