Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20660 155 / 1e-41 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G73220 63 / 2e-10 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79410 49 / 5e-06 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16370 48 / 1e-05 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G16390 47 / 2e-05 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79360 46 / 5e-05 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT3G13050 43 / 0.0004 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013330 [exp] 293 / 2e-93 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10014801 [exp] 176 / 6e-49 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10025543 [exp] 76 / 1e-16 AT3G20660 127 / 8e-36 organic cation/carnitine transporter4 (.1) Lus10024216 [exp] 74 / 1e-15 AT1G74670 106 / 1e-30 GA-stimulated Arabidopsis 6, Gibberellin-regulated family protein (.1) Lus10021587 [exp] 75 / 5e-15 AT1G40087 42 / 1e-04 Plant transposase (Ptta/En/Spm family) (.1) Lus10037707 [exp] 77 / 6e-15 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10001304 [exp] 73 / 2e-13 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10029801 [exp] 70 / 3e-13 ND / Lus10030065 [exp] 67 / 8e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130533 [exp] 157 / 5e-42 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.015G029400 [exp] 49 / 8e-06 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.016G039000 [exp] 45 / 0.0001 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.007G003000 [exp] 44 / 0.0002 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005217 pacid=23145844 polypeptide=Lus10005217 locus=Lus10005217.g ID=Lus10005217.BGIv1.0 annot-version=v1.0 ATGACTAATTGTGGTGGTTACATAATTAAGGTTATTTGTTCTAGTTTATATAAGAAGAAGAAAAAACAGGTTAATAAGCTGTTCCAGAATCTCGCTGTCG GAGGAGTTTCCACCGCGAGTGCGCTCCTCCGGTACTCGTTCGACGCTCTGTGGTTCGCCGGCCGGCCTCTGAGGTCTCTGAAGACATCTGTTGCCGTTTT TCTCTTTTCTGATTCGTTCATGGTCGATACGTCTGGGGCTTCTTCTTCCGCCGCTCCCCCTCCCCCTTCCTCCACCTCCTGGGCTTCGATCGTCTCTGAT CCGAAGACTGATCTTCAATACGTTGAGATCCCTGCGGATGTGATCATTGATGGAGTTTTGGTGATTCCGCAAGTTATTGTGGATATCGGTCTCAAAAAAC TTCAATCAACTGTCGTCGCCCTATTTCTTGGCTCTATTCCTCCTTTAAGAGTGTTTCAATCCATGGCCGATCGTCTCTGGGGATATGAAGGCAAGCGGAC TCAACGCTGGGAAGGAAAGGCGCGCCACCGCCGTCTGCATCATCCACGCTGTCTCTGGCGTCGTAACGGCATTCTCTCCAAACTACTGGACCTACATCCT TCTCCGTCTCCTTACCGGCATAGGCTCCGGCGGCGTGGGCCTCACCTCGTTCGTCCTCTCCACCGAGCCAGTAGGATCGACCAAGCTGGAGTCGTTGGCG GTTCGTCCTTCTACTTCTTCTCTTCCGGGGTAGCTCTCCTCTCCGTTGTCGCCTACTTCGTTCGGCCTTGGAGATTGCTCTACATTGTGTCATCGGTTCC TTCCGTTGCATACCTCGTTGTTGTTCTTCCGTTAATCTCTGATTTGCATTTGCTATCTCAAATTACCACTTCTAGAAGGATCACCCATAACCCGAACAAG ACATCTCACATCCATGACGGTATCTACGGCATCTACGGCTTGAGCCTCAATGTGGTCAACCTCGACACAAACCTCTACGCCAACGTGGCAGTCAACGCAC TTGCCGAGATGCCTTCCTTCACTTTGACCGCCGCCCTGCTGGACAGTTGGGGCAGGAAACCACTGGTGAATGGAACCCAGCTGTTCACGGGTGCCTTCTG CCTACTGGGTTGGAGCATAGTTATATCCACACGTAGTGGCGCCGCGTGGGCGGTGGTGAAGACGGCGTGCGGTGTGATGGGAGTGTTCGGCGCCGCCGGG ACGTACAGTTTGTTATATATCTACGGGGCGGAGCGTTTCCCAACGGTGGTGAGGAACGCTGCGTTGGGTTGCTTGGTGCAGGCGGCTCAGGTGGGTGATA TCCTTGCGCCGTTTGTTGTGGTGATGCCGAGCTGGCTGCCGTTTACAGCTTTGGCGGGCTGTGCCGTGGGTGGCGGGTTGCTGACGTTTCTTTTGACGGA GACGCTGATTCAGCCTTTGTATGATGCCATTGCTGGGATTGAGGGAGCTAATTGGGGAGCGTAG
AA sequence Show only first row Show all	>Lus10005217 pacid=23145844 polypeptide=Lus10005217 locus=Lus10005217.g ID=Lus10005217.BGIv1.0 annot-version=v1.0 MTNCGGYIIKVICSSLYKKKKKQVNKLFQNLAVGGVSTASALLRYSFDALWFAGRPLRSLKTSVAVFLFSDSFMVDTSGASSSAAPPPPSSTSWASIVSD PKTDLQYVEIPADVIIDGVLVIPQVIVDIGLKKLQSTVVALFLGSIPPLRVFQSMADRLWGYEGKRTQRWEGKARHRRLHHPRCLWRRNGILSKLLDLHP SPSPYRHRLRRRGPHLVRPLHRASRIDQAGVVGGSSFYFFSSGVALLSVVAYFVRPWRLLYIVSSVPSVAYLVVVLPLISDLHLLSQITTSRRITHNPNK TSHIHDGIYGIYGLSLNVVNLDTNLYANVAVNALAEMPSFTLTAALLDSWGRKPLVNGTQLFTGAFCLLGWSIVISTRSGAAWAVVKTACGVMGVFGAAG TYSLLYIYGAERFPTVVRNAALGCLVQAAQVGDILAPFVVVMPSWLPFTALAGCAVGGGLLTFLLTETLIQPLYDAIAGIEGANWGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10005217 [exp]	0	1
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	10.6	0.7972
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	14.2	0.8070
AT3G47570			Leucine-rich repeat protein ki...		Lus10014500 [exp]	22.1	0.7831
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	26.5	0.7874
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	32.7	0.7608
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	44.7	0.7648
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	47.6	0.7596
AT4G18490			unknown protein		Lus10021779 [exp]	52.8	0.7653
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	53.5	0.7660
AT2G24370			Protein kinase protein with ad...		Lus10026989 [exp]	55.4	0.7702

Compare expression of checked genes

Lus10005217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.