Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01060 558 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030700 [exp] 742 / 0 AT3G01060 684 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090100 [exp] 583 / 0 AT3G01060 673 / 0.0 unknown protein Potri.004G125301 [exp] 137 / 2e-38 AT3G01060 136 / 4e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005219 pacid=23155713 polypeptide=Lus10005219 locus=Lus10005219.g ID=Lus10005219.BGIv1.0 annot-version=v1.0 ATGGCAGCAGGAGCAATTAACCTTTGCGGTACTAAGTCAACAGTGGTATTACAGAATCTGCTAGTTTCTTCAAAGGATCCGAATTCTGGATTTCTTGGCG GGTCATTGTTGAGGAACAACAAGAATCTCTGCTGCTTGGAATCAAAGCCCCGAAACTTCAGAATAAGAAGAGAAAGGTTGAGTCTGGTGGTTGCAGCTGC TGCTACTGAGAGCGATACAAAGGGAAGCTCTGATGGAAGATTTTACTTCAATTTCACTGGCTTTCCTTTCCCTCTCGGTCCTTTCCTCAACAGACGCACC ATCCGAACCGAGGCTGTGAAAGGTTGCGTATGGCTGTTCGAACAAGAGCAAGCTTTAGGGTTTAGCAGTGTTTCCACGAACACCCGGATGACTGTCATCA AACTCAAATCTGGTGGCCTCTGGGTGCATGCTCCCATTGCTCCCACAAAGGAATGTATTCAGCTTCTGAAGGAGTTGGATGCACCTGTGGAATACATCGT TCTACCTACATTTGCTTACGAGCATAAAATTTTTGTTGGTCCATTCTCTCGGAAAACATTGGTAGACGAGGATATGTCAACCCCTTGGGCTGATGACATT GAACAAAAGGTTCTAAGTGCACCAGAAGTCGGACTTGGACCTTACGTGGAGGTTGCTTTCTATCACAAGCGTTCAAGATCACTTCTAGTAACTGATGCAG TAATCTTCGTCCCGAGAAATCCACCTGAATGCATCGACAGAGATTCATTACTGGCATCTGCGAAGAATGGCTTAGCGGTGAAAATCCTTAGTAAAGGGAA GGAAGTTCCTGAAGGACCTGTTGTTGACAACGCGATGACCCGCCAAAAGGGGTGGGAAAGAATGGTTCTCCAAATTTTGTTCCTCGGTCCGTCTAATCTG CTGGAACCCAAAGCAAGTTTTGCTCAGATGTCACAGAAGTTGATAGTCTCACCCATTATAAAGACCTTGGTATTCAGCAAAGTTCCTGAAAAGGTGAGGG ATTGGATTGATGGCATTGCAAGGGACTGGAGATTCAAGAGGATAATCCCAGCTCATTTTGCTGCTCCAGTAAATGTTAGTAGGTCGGAATTCTTGGCTGC TTTCGCGTTCTTGGACGATCTATTGGGCGATCGATATGCTACACGGTGGCCTTCGCTGTCTCTAGTATTAGCCTCCATACTGGGGAAAGCTGCCAGTTAC TTCCCCGCAGATGACATGAAGACATTGTCATCCCTTGATGAGTTCTTAGTCTCAGTTGGAGCTGTTAAGAAGACAGTCTCTGGCCGGAAAAGAAAAGCAC AGTTGTAG
AA sequence Show only first row Show all	>Lus10005219 pacid=23155713 polypeptide=Lus10005219 locus=Lus10005219.g ID=Lus10005219.BGIv1.0 annot-version=v1.0 MAAGAINLCGTKSTVVLQNLLVSSKDPNSGFLGGSLLRNNKNLCCLESKPRNFRIRRERLSLVVAAAATESDTKGSSDGRFYFNFTGFPFPLGPFLNRRT IRTEAVKGCVWLFEQEQALGFSSVSTNTRMTVIKLKSGGLWVHAPIAPTKECIQLLKELDAPVEYIVLPTFAYEHKIFVGPFSRKTLVDEDMSTPWADDI EQKVLSAPEVGLGPYVEVAFYHKRSRSLLVTDAVIFVPRNPPECIDRDSLLASAKNGLAVKILSKGKEVPEGPVVDNAMTRQKGWERMVLQILFLGPSNL LEPKASFAQMSQKLIVSPIIKTLVFSKVPEKVRDWIDGIARDWRFKRIIPAHFAAPVNVSRSEFLAAFAFLDDLLGDRYATRWPSLSLVLASILGKAASY FPADDMKTLSSLDEFLVSVGAVKKTVSGRKRKAQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01060			unknown protein		Lus10005219 [exp]	0	1
AT3G01060			unknown protein		Lus10030700 [exp]	1.0	0.9646
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031686 [exp]	2.4	0.9318
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	4.5	0.9288
AT2G05620		PGR5	proton gradient regulation 5 (...		Lus10011777 [exp]	5.7	0.9289
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	6.0	0.9237
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	6.3	0.9244
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10027041 [exp]	7.0	0.9115
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	8.5	0.8968
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	9.8	0.9080
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031105 [exp]	10.8	0.8897

Compare expression of checked genes

Lus10005219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.