Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29270 269 / 1e-90 RING/U-box superfamily protein (.1.2) AT1G69330 243 / 4e-80 RING/U-box superfamily protein (.1) AT1G74370 207 / 2e-66 RING/U-box superfamily protein (.1) AT1G21651 51 / 5e-07 zinc ion binding (.1) AT1G21650 51 / 5e-07 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT5G13530 43 / 0.0002 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030699 [exp] 423 / 3e-151 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2) Lus10003473 [exp] 274 / 3e-92 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10015732 [exp] 266 / 4e-89 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10004666 [exp] 214 / 1e-68 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1) Lus10026648 [exp] 218 / 1e-67 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1) Lus10028560 [exp] 52 / 3e-07 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10024135 [exp] 42 / 0.0004 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G090000 [exp] 345 / 3e-120 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.004G125400 [exp] 329 / 4e-114 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.012G067200 [exp] 263 / 3e-88 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.010G161100 [exp] 224 / 7e-73 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.019G066500 [exp] 49 / 2e-06 AT1G21651 716 / 0.0 zinc ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005220 pacid=23155722 polypeptide=Lus10005220 locus=Lus10005220.g ID=Lus10005220.BGIv1.0 annot-version=v1.0 ATGTGGAACTTTGCATCCAACTGTCTAGCAGGAAGTGTCGGTTTCAAAAACTCGTCAAAGCCAACTCAAGCCGCTACTGTTTCTGAATCTTCAGATGATG AAACATCTTCTGTTGTTAGCAGAGAAGAAGGCTTGGAGTGCCCAATATGCTGGGAATCCTTCAACATTGTTGAAAATGTCCCCTATGTCTTGTGGTGTGG CCATACCCTTTGTAAAAACTGCATCTTGGGGCTACAGTGGGCTGTTGTGAAGTTCCCCACATTGCCAGTTCAGCTCCCTCTCTTCATCTCTTGTCCATGG TGCAATGTCTTGTCGTTTCGCCTCGTGTACAGAGGAAACCTCAAGTTTCCACGCAAGAACTACTTCGTACTTTGGATGGTCGAAAGCAAGAACGACGATC GATGCCAGACCCGTGCATCTTCTCAATTTGAAGATCATCCCAATGTTTGGTCACCGAATTGCAGTTTGCCGCCAAGAAATCAAGATGACCGTCATGTTGT ATCAAGAGGTGAACATAATCATCACCCACGGCAGTTAAGGACGAATCATGTCGATGATGATGATGATCACAGTAACCATCTCCTCAATGTAGCGAGAGTG AATTTTTCACTGCAGAAGTCACTGGTTTTCTTCGTTCACCTTACATCAAAGTTCCCTCTGGTCATCATATTCCTTCTCATTATCATATATGCCATACCTG CCAGTTTTTCCATCTTGGCCCTGTACGTTCTTATCACTGTCCTTTTCGCCATCCCATCGCTTCTCATACTGTACTTTGCTTATCCAAGTTTGGATTGGCT TGTCAGAGAAATAATCACTTGA
AA sequence Show only first row Show all	>Lus10005220 pacid=23155722 polypeptide=Lus10005220 locus=Lus10005220.g ID=Lus10005220.BGIv1.0 annot-version=v1.0 MWNFASNCLAGSVGFKNSSKPTQAATVSESSDDETSSVVSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPVQLPLFISCPW CNVLSFRLVYRGNLKFPRKNYFVLWMVESKNDDRCQTRASSQFEDHPNVWSPNCSLPPRNQDDRHVVSRGEHNHHPRQLRTNHVDDDDDHSNHLLNVARV NFSLQKSLVFFVHLTSKFPLVIIFLLIIIYAIPASFSILALYVLITVLFAIPSLLILYFAYPSLDWLVREIIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	0	1
AT1G71090			Auxin efflux carrier family pr...		Lus10036001 [exp]	1.0	0.9425
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	2.0	0.9383
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10017167 [exp]	7.5	0.9329
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	7.7	0.9269
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	7.7	0.9373
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030920 [exp]	8.1	0.9307
AT2G24550			unknown protein		Lus10026939 [exp]	10.4	0.9381
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	11.8	0.9368
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	11.8	0.9314
AT5G59960			unknown protein		Lus10004947 [exp]	12.0	0.9225

Compare expression of checked genes

Lus10005220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.