Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15410 611 / 0 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT5G54250 437 / 9e-148 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT4G30560 257 / 4e-78 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 257 / 9e-78 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT1G19780 256 / 2e-77 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G57940 254 / 3e-77 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G15990 252 / 3e-76 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G53130 249 / 4e-75 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT4G01010 245 / 1e-73 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT1G01340 244 / 2e-73 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030698 [exp] 792 / 0 AT5G15410 854 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10004509 [exp] 433 / 6e-146 AT5G54250 948 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Lus10024073 [exp] 265 / 9e-81 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10041662 [exp] 265 / 2e-80 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 258 / 3e-78 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10036260 [exp] 259 / 1e-77 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10019014 [exp] 244 / 8e-71 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10021461 [exp] 237 / 1e-70 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10014925 [exp] 236 / 1e-70 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089800 [exp] 689 / 0 AT5G15410 1005 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.017G089900 [exp] 565 / 0 AT5G15410 911 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.001G407800 [exp] 452 / 1e-153 AT5G54250 972 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Potri.001G043900 [exp] 258 / 3e-78 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 256 / 2e-77 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 255 / 2e-77 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.012G002200 [exp] 247 / 2e-74 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 246 / 4e-74 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G097600 [exp] 234 / 7e-70 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.014G097900 [exp] 234 / 2e-69 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10005221 pacid=23155683 polypeptide=Lus10005221 locus=Lus10005221.g ID=Lus10005221.BGIv1.0 annot-version=v1.0 ATGCGCAGAATGCAGAAGGTCACAGGCTACATCTTCGGCACTATTTGGTGGGGTTTCGCCCTGAATCTCATCGCTTACTTCATCGCCTCTCACGTTGCTG GAGGATGCTGGTATGTTCTCGCCATTCAACGAGCTGCTTCGTGCATCAAGCAGCAGTGTGACATGATGGATTCACACTGCGACTTGTCCCTTTCGTGCTC CGAAGAAGTATGCTACCGACTTGTGTTACAAGCTACCGCGGCTGGCGGGGGTAATAACTCTTGCGGTGGAAACTCAACTTCTGCTGCACCTCTCAGAACC CCAATGTGCTTGGACATGGATGGAAAATTCAACTATGGGATTTATAAGTGGGCTCTCCCTGTCATTTCTAGCAATTCCTTGGCTGTCAAGATTCTTTACC CCATTTTCTGGGGCCTCATGACCCTCAGTACGTTTGGGAATGATCTTGAACCTACAAGTAACTGGCTGGAAGTGATGTTCAGCATATGCCTGGTGCTTAG TGGACTGATGCTCTTCACTTTGTTGATTGGTAACATTCAGATGTTCTTGCACGCGGTGATGGCAAAGAAGAGAAAGATGCAGTTGAGATGCAGGGACATG GAATGGTGGATGAGGAGAAGACAGCTCCCGTCCCGTCTCAGGCAGAGAGTTCGACACTACGAACGCCAGAACTGGGCGGCCATGGGAGGCGAGGACGAGA TGGAACTCATCAAAGACTTGCCGGAAGGTCTGCGACGAGATATCAAGCGTTCCCTCTGCCTAGAGCTCATTAAGAAGGTGCCACTTTTCCACAACTTGGA TGATTTGATACTTGACAACATATGCGACAGAGTTAGGCCTGTTGTATTCTCCAAGGATGAAAAGATAATAAGGGAAGGGGACCCGGTTAAGAAAATGGTG TTCTTAGTCCGCGGAAGGATAAAGAGTTCCCAGAGCCTTAGCAAAGGTGTGGTAGCGACGAATGTGATCGAAGACGGAGGTTTCTTGGGAGACGAATTGT TGTCGTGGTGCCTCCGCCGCCCATTCAACGAGAGGCTACCGGCTTCATCGGCTACATTCGTGTGCGTCGAGCCCACCGAGGCGTTCGGGCTGGATGCGAA CCATCTCAAGTACATAACGGACCATTTTCGGTACAAGTTTGCAAACGAGAGGCTCAAGAGGACCGCGAGGTATTACTCGTCGAATTGGCGTACTTGGGCG GCCGTGAACCTCCAGTTCGCCTGGAGACGCTACCGGAAGAGGCGGGCAGGAGGTGGTGGTGAACATGGTCCGGTGAATCTTGCGGTGGAAAATGGAGGGG ATGCTGAACACCGGTTGCTTAGGTATGCTGCAATGTTCATGTCTTTTAGACCACACGACCACCTTGAATGA
AA sequence Show only first row Show all	>Lus10005221 pacid=23155683 polypeptide=Lus10005221 locus=Lus10005221.g ID=Lus10005221.BGIv1.0 annot-version=v1.0 MRRMQKVTGYIFGTIWWGFALNLIAYFIASHVAGGCWYVLAIQRAASCIKQQCDMMDSHCDLSLSCSEEVCYRLVLQATAAGGGNNSCGGNSTSAAPLRT PMCLDMDGKFNYGIYKWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVMFSICLVLSGLMLFTLLIGNIQMFLHAVMAKKRKMQLRCRDM EWWMRRRQLPSRLRQRVRHYERQNWAAMGGEDEMELIKDLPEGLRRDIKRSLCLELIKKVPLFHNLDDLILDNICDRVRPVVFSKDEKIIREGDPVKKMV FLVRGRIKSSQSLSKGVVATNVIEDGGFLGDELLSWCLRRPFNERLPASSATFVCVEPTEAFGLDANHLKYITDHFRYKFANERLKRTARYYSSNWRTWA AVNLQFAWRRYRKRRAGGGGEHGPVNLAVENGGDAEHRLLRYAAMFMSFRPHDHLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10005221 [exp]	0	1
AT3G17510		CIPK1, SnRK3.16	SNF1-RELATED PROTEIN KINASE 3....		Lus10018334 [exp]	6.0	0.9357
AT3G15290			3-hydroxyacyl-CoA dehydrogenas...		Lus10020828 [exp]	6.8	0.9464
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	13.9	0.9360
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	24.6	0.9264
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	25.5	0.9190
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	26.0	0.9291
AT2G39950			unknown protein		Lus10040223 [exp]	26.3	0.9150
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	26.7	0.9309
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	34.1	0.9287
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028392 [exp]	35.6	0.9071

Compare expression of checked genes

Lus10005221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.