Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15400 1278 / 0 U-box domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030697 [exp] 1675 / 0 AT5G15400 1391 / 0.0 U-box domain-containing protein (.1) Lus10016166 [exp] 44 / 0.0006 AT3G52450 462 / 2e-161 plant U-box 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089600 [exp] 1351 / 0 AT5G15400 1557 / 0.0 U-box domain-containing protein (.1) Potri.004G121200 [exp] 1338 / 0 AT5G15400 1509 / 0.0 U-box domain-containing protein (.1) Potri.010G113900 [exp] 46 / 0.0001 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.002G248600 [exp] 44 / 0.0005 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain CL0229 [flax] [poplar] PF10408 [flax] [poplar] Ufd2P_core Ubiquitin elongating factor core
Representative CDS sequence Show only first row Show all	>Lus10005222 pacid=23155680 polypeptide=Lus10005222 locus=Lus10005222.g ID=Lus10005222.BGIv1.0 annot-version=v1.0 ATGGCGACGATTCCCAAACCCCAAAGGTCTCCGGAAGAAATCGAGGACATCATCCTTCGCAAAATCCTCCTCGTCTCCCTCTCCGAAGCTCCCGATCCCA GAATCGTTTACTTGGAGATGACAGCAGCTGAGATCCTCAGCGAGGGCAAAGAATTGAAGCTCAGTCGCGACCTATTGGAGCGAGTTCTCATTGATCGCCT CTCCGGCGACTTCCCCACCGCCGAGCACCCCTCANNNNGGCTCCTGCCGTTGAGTGTTGGGGCGGTTGGCCGGGACGGGTTTAACGGAGGTGGAGGAAGT CAGCCTCCTCCTCCAGGGTTTCTGGATGAATTGTTCAGCGAGGCGGATTTCGATGCTTTGTATCCTATATTTAAATCGCTTTACGATGAATTGCGAGTTA ATGTGATCAAGGTATCAGCTTTGGGGAACTTTCAACAGCCTTTAGCTGCACTGTTGTATTTAGTTAAGTTGCCCGCCGGTGCTAAGTCGCTAGTGAATGA TCCTTGGTGGATTCCTAAAGGAGCTTACTTGCATGGACGAGTCATTGAAGTGGCTAGTGTATTAGGGCCGTTCTTTCACGTTAGTGCATTGCCTGATCAT TATACCACGTTCAAGAGCGAGCCTGATGTTGGACAACAGTGTTTCTCAGCAGCTTCTACTAGCAGACCTGCTGACTTAGTATCTTCGTTTACTACGATAA AGACAGTAATGAATAGCTTATACGAGGGGCTGTCCGATGTGATGTTGACACTCCTTAAAAATGCCGAGATTCGCGAGCATGTCCTTCAGTATCTTGCTGA GGTGATCAACAGAAACGCATCTAGATCACATATTCAGGTTGATCCCGCAACTTGTGCGAGCTCGGGAATGTTTGTCAATCTGAGCGCGGTTATGCTTCGA CTCTGTGAACCCTTTTTGGACACAAATTGCTCCAAGGTTGACAAGATTGATCCAGCATATGTATTCTACAGTGATCGTTTGGACCTAAGAGGGTTGACGG CTTTACATGCTTCTTCAGAAGAAGTTGCTGAGTGGATTAAAAGTAATAATCCTTTGAAATCTAATAAAGATTCTGGATCTGGCGATGTTGAAAACCGCTT GGTCCAATCTCAAGGAGCCAGTAGTTCTGGTAGTGGAACTGCTGATGCCAAGTCTACATTATCTGGTGGTGGGAAGGCTTCATACACATTCATATGTGAA TGCTTCTTTATGACTGCAAGGGTGCTAAATTTGGGGATGTTGAAAGCATATTCCGACTTCAAGCACTTGGTTCAGGACATTTCAAGATCCGAGAGCTCTC TGTCAAGACTAAAAACCATGCACGAACAGACACCTTCTCCACAAATACAGCTGGAAATTAATCGCCTTGAGAAGGAATTAGAATTATATTCCCAGGAGAA ACTTTGTTATGAGGCCCAGCTACTGAGGGATCCAACTCTCATTCAACAAGGGCTATCTTTCTACCGACTAATGGTGGTTTGGTTAGTTAATCTGGCCGGT GGCTTTAAAATGCCTCTTTCATCAACGTGCCCCATGGAATTTGCATCGATGCCTGAGCATTTTGTGGAAGATGCATTGGAATTACTAATATTTGCTTCTC GAATCCCAAAAGCTTTAGATGGGGTCATTCTGGATGATTTTATGAACTTCATTATCATGTTTATGGGGAGTCCAACACACATCAGGAACCCTTATCTCAG AGCTAAGATGGTGGAGGTGTTGAACTGTTGGATGCCACGCGGGAGGTTTTGCTTCTGCAGTGGTTCATCTGCAACAAGTACTCTCTTTGAGGGACACCAA TTGTCCCTCGAGTATCTTGTGAGGAATCTATTGAAGCTTTATGTTGACATTGAGTTCACCGGTTCTCACACTCAGTTCTATGACAAGTTCAACATCAGGC ATAATATTGCCGAGCTGCTAGAGTACCTATGGCAGGTGCCTAGTCATCGTAATGCGTGGAGACAGATTGCCAAGGAAGAGGAAAAGGGTGTATACTTGAA TTTCTTAAACTTTTTAATCAACGATAGCATATATCTTCTGGATGAAAGTTTGAACAAGATTCTGGAGCTGAAAGAAATGGAAGCTGAAATGTCAAACACC GTGGAATGGGAACAGAGACCAGCTCAGGAGAGGCAGGAAAGAGCCCGGGTGTTCCAGTCCCAGGAAAATATCATCCGGATTGATATGAAGTTGGCAAATG AAGATGTCAGTCTGCTAGCCTTCACATCAGAGCAGATAACAGTTCCTTTCCTTCTTCCTGAGATGGTGGAAAGAGTGGCCAGCATGTTGAATTACTTTCT CTTACAACTCGTTGGTCCCCAGAGGAAATCTCTTACTCTTAAAGACCCGGAGAAGTATGAATTTCGTCCAAGACAGCTCCTTAAGCAGATTGTAAACATA TACGTCAACCTAGCAAGGGGTGATAAAGAGAACATATTCCCAACTGCCATCTCAAAGGATGGAAGGTCGTACAATGAACAGCTATTTAGTGCCGCTGCTG ATGTCCTTCGAAGGATTAATGAAGATGGGAGGATCATACAGGAGTTTGTCGAGCTTGGTGCAAAAGCAAAAATTGCTGCCACTGAAGAAATGGATGCTGA AGCTACCCTTGGGGAGATACCAGACGAATTCCTTGACCCGATCCAGTACACGCTGATGAAAGACCCAGTCATACTACCTTCGTCGAGAATCACGGTGGAC CGGCCTGTCATTCAAAGGCATCTCCTTAGCGACAGCACGGACCCTTTCAACCGATCGCATCTGACGGCAGATATGCTGATATCGGACGTGGAGCTGAAGG CAAAGATAGAGGAGTTCATCAGATCTCAACAGCTCAAGAGGCATAGTAGTGACGACTTCAGCATACAGAGCAGCAAAGCAGCAATGCAAACCACGGCAGG GGACATGCTGATTGATTGA
AA sequence Show only first row Show all	>Lus10005222 pacid=23155680 polypeptide=Lus10005222 locus=Lus10005222.g ID=Lus10005222.BGIv1.0 annot-version=v1.0 MATIPKPQRSPEEIEDIILRKILLVSLSEAPDPRIVYLEMTAAEILSEGKELKLSRDLLERVLIDRLSGDFPTAEHPSXXLLPLSVGAVGRDGFNGGGGS QPPPPGFLDELFSEADFDALYPIFKSLYDELRVNVIKVSALGNFQQPLAALLYLVKLPAGAKSLVNDPWWIPKGAYLHGRVIEVASVLGPFFHVSALPDH YTTFKSEPDVGQQCFSAASTSRPADLVSSFTTIKTVMNSLYEGLSDVMLTLLKNAEIREHVLQYLAEVINRNASRSHIQVDPATCASSGMFVNLSAVMLR LCEPFLDTNCSKVDKIDPAYVFYSDRLDLRGLTALHASSEEVAEWIKSNNPLKSNKDSGSGDVENRLVQSQGASSSGSGTADAKSTLSGGGKASYTFICE CFFMTARVLNLGMLKAYSDFKHLVQDISRSESSLSRLKTMHEQTPSPQIQLEINRLEKELELYSQEKLCYEAQLLRDPTLIQQGLSFYRLMVVWLVNLAG GFKMPLSSTCPMEFASMPEHFVEDALELLIFASRIPKALDGVILDDFMNFIIMFMGSPTHIRNPYLRAKMVEVLNCWMPRGRFCFCSGSSATSTLFEGHQ LSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKEMEAEMSNT VEWEQRPAQERQERARVFQSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPRQLLKQIVNI YVNLARGDKENIFPTAISKDGRSYNEQLFSAAADVLRRINEDGRIIQEFVELGAKAKIAATEEMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVD RPVIQRHLLSDSTDPFNRSHLTADMLISDVELKAKIEEFIRSQQLKRHSSDDFSIQSSKAAMQTTAGDMLID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	0	1
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	1.4	0.8421
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	3.5	0.8298
AT2G32240			unknown protein		Lus10003812 [exp]	6.2	0.8311
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10037070 [exp]	6.3	0.8265
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	14.4	0.8227
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	15.0	0.8281
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	16.9	0.8046
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	17.5	0.8122
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	17.5	0.8301
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10032305 [exp]	19.3	0.8210

Compare expression of checked genes

Lus10005222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.