Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01100 773 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 671 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G58520 471 / 4e-156 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 436 / 1e-142 Early-responsive to dehydration stress protein (ERD4) (.1) AT4G22120 369 / 8e-117 ERD (early-responsive to dehydration stress) family protein AT3G21620 360 / 2e-113 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 361 / 3e-113 early-responsive to dehydration stress protein (ERD4) (.1) AT4G15430 359 / 4e-113 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT3G54510 357 / 6e-113 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G11960 358 / 1e-112 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037139 [exp] 706 / 0 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 676 / 0 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10004597 [exp] 485 / 8e-162 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 481 / 3e-160 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 414 / 5e-135 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10035300 [exp] 371 / 9e-118 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10043455 [exp] 368 / 8e-117 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030024 [exp] 364 / 6e-115 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 360 / 9e-113 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115800 [exp] 906 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 754 / 0 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 749 / 0 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.002G113800 [exp] 475 / 6e-158 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 389 / 5e-125 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.014G156100 [exp] 369 / 1e-116 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.001G133800 [exp] 354 / 1e-110 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 350 / 4e-109 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 347 / 1e-108 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 347 / 2e-108 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10005223 pacid=23155678 polypeptide=Lus10005223 locus=Lus10005223.g ID=Lus10005223.BGIv1.0 annot-version=v1.0 ATGATCCTCTCGGCTTTGCTGACTTCAGTCGGAATCAATCTCGCCCTCTGCTTCTTGTTCTTCACACTCTACTCCGTCCTCCGTAAGCAGCCATGGAATA GCGTCGTCTATGCACCTCGGCTGGTTGACAAGCAGAGACGAAAGGAATCTGAGAACGCCGCTTCCGGCGAGGAGGACGATGAGCTCTTTAACTTGGACAT GCTGTTGCCTTCCGCTGGCTGGGTCAGATGCGCCTGGCAGATATCTGAGGACGAGCTGTTGAAGCGTTCCGGCCTGGATGCTGTTGTTTTCATGCGCATT TTCATCTTCAGCTCCAGAGTTTTCGCGATTGGCGGAGCTATTGGGATTTTCATACTCCTTCCAATTAATTATCTGGGGAATCAACTGAGTGTTGACTTCT ATGATTTGCCAAACAAGACTCTGGAATCTTTCAGCATATCGAATGTTAACGATGGATCGTACTGGTTATGGGTTCACTTTTCGGCTGCGTATATTTTTAC TGGAGTTGTCTGCTATCTTCTTTATTATGAATACAGCTATATTTCGTTGAAAAGAATTGCTTGGTTCTACTTGTGTGCACCTCAACCACATCAATATACC ATAGTAGTCCGTGGTATACCATCCTCGAGCGAAAGAAGCTATAGTGAAACTGTTCAGATGTTTTTCACGGAAAACCATCCTTCCACTTATCTTTCACACA GGGTTGTTCATCAAACAAGCAAAATTCGGGAGCTCATTAAAGATGCAGAGAAATTGTACCGGAGACTTGGGCGAATGGAATCACAGAGCACTCAACGAAA AAATAATAGAGATCGGTTCTTGGGCTTTGGTCGGAACAAGGATAACACTGCAAACCATTATGAGAGAAGGTTGGAAGACGTGGAGAGAAGTGTGAGAACA CATCAGAATTCGTTTGCCGGGGAAGTGTCTGACCCACGTATGGAAGTTCCAGTTGCTTTTGTGTCATTCAAGTCACGATTCGGTGCTGCCACAGCTCTAC GTATCCAACAAGGGATCAATCCCACAGACTGGCTCACGGAGGAAGCTCCTGAGCCTCGTGACATTCATTGGTCTTCCTTCTCTTCTTCATTCATGAAAAG ATGGATAAGCAAGATAGTTGTTGCCGGATCATGTGTTGCTCTTACGATTCTGTTCCTTATTCCAGTTGCTATCGTTCAAGGTCTTGCTAATCTGGAGCAA CTGGAAACTTGGTTTCCTTTCTTGAAAAGCATTCTAGATCTGAGTATTGTCAGCCAACTGATTACTGGATATTTACCGAGCCTCGTTCTAACTCTTTTCC TGCTTCTCGTGCCACCTATTATGTTGATGCTATCATCCATGGAAGGGCACCTTTCTTCTAGTAATATCGAAAAAAGTGCATGTACCAAGGTTTTATGGTT CACTATATGGAACATCTTCTTTGCAAATGTACTGTCAGGTACAGCCTTATCTCAGTTGGATGTCTTCCTTGAACCGAAGAATATCCCCAAAGTACTAGCG GAAGCCGTCCCAGGTCAGGCAACTTTCTTCATTTCATACGTGGTAACATCTGGATGGACGAGTGTATCATCTGAAGTCTTTCGACTGACTCCTCTGCTCT TGAGTTATCTGAATGGATTGTTTTCTAGCAACGACAATGAGGAACTTGAGGTTCCGAAGATTCCATACTACAGCGAGATGCCAAGAATCCTTTTCTTTGG ACTCCTGGGTACAACGTATTTCATCCTCTCACCATTAATTCTCCCATTTATCTTGGTCTACTTCTGCATAGGATACATCATATTCCGAAACCAGCTACTG AATGTGTATGAACCGAAGTACGAAACAAATGGACGATACTGGCCAACAGTGCACAACGCAACAATATTTTCCTTGATCTTGATGCACATCATCTCCATCG GAATATTTGGGGTGAAGAAAGTGCCTATAGCATCCACTTTAACTTTGCCACTTCCGATTCTTACGCTACTCTTCAATGCATACTGCCGCAGACGATTCCT ACCCCTCTTCCGATATTATCCAACCGAGAGTATGGTGAAGAAAGATAAGGAAGACGAGAATCAACACAACATGAGCGAGTTTTATGAGAAATTGGTTACT GCATATCGCGATCCAGCGTTGATGCCAGTCCAGTACGTCAGGAACAGCGACAGGCTTACTTCTCCTCTTCTTCAATCACAAGTTTGA
AA sequence Show only first row Show all	>Lus10005223 pacid=23155678 polypeptide=Lus10005223 locus=Lus10005223.g ID=Lus10005223.BGIv1.0 annot-version=v1.0 MILSALLTSVGINLALCFLFFTLYSVLRKQPWNSVVYAPRLVDKQRRKESENAASGEEDDELFNLDMLLPSAGWVRCAWQISEDELLKRSGLDAVVFMRI FIFSSRVFAIGGAIGIFILLPINYLGNQLSVDFYDLPNKTLESFSISNVNDGSYWLWVHFSAAYIFTGVVCYLLYYEYSYISLKRIAWFYLCAPQPHQYT IVVRGIPSSSERSYSETVQMFFTENHPSTYLSHRVVHQTSKIRELIKDAEKLYRRLGRMESQSTQRKNNRDRFLGFGRNKDNTANHYERRLEDVERSVRT HQNSFAGEVSDPRMEVPVAFVSFKSRFGAATALRIQQGINPTDWLTEEAPEPRDIHWSSFSSSFMKRWISKIVVAGSCVALTILFLIPVAIVQGLANLEQ LETWFPFLKSILDLSIVSQLITGYLPSLVLTLFLLLVPPIMLMLSSMEGHLSSSNIEKSACTKVLWFTIWNIFFANVLSGTALSQLDVFLEPKNIPKVLA EAVPGQATFFISYVVTSGWTSVSSEVFRLTPLLLSYLNGLFSSNDNEELEVPKIPYYSEMPRILFFGLLGTTYFILSPLILPFILVYFCIGYIIFRNQLL NVYEPKYETNGRYWPTVHNATIFSLILMHIISIGIFGVKKVPIASTLTLPLPILTLLFNAYCRRRFLPLFRYYPTESMVKKDKEDENQHNMSEFYEKLVT AYRDPALMPVQYVRNSDRLTSPLLQSQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	2.4	0.8214
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10011062 [exp]	4.5	0.7757
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	6.7	0.7948
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	7.3	0.7911
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	7.7	0.7961
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	8.4	0.7665
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	9.2	0.7753
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032361 [exp]	11.0	0.8061
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	13.9	0.7980
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	23.7	0.7344

Compare expression of checked genes

Lus10005223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.