Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) AT1G33780 170 / 5e-51 Protein of unknown function (DUF179) (.1) AT3G19780 65 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030695 [exp] 219 / 1e-72 AT3G29240 89 / 8e-22 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030696 [exp] 209 / 9e-69 AT3G29240 139 / 8e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10001286 [exp] 183 / 9e-56 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1) Lus10009463 [exp] 181 / 6e-55 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10040970 [exp] 57 / 1e-08 AT3G19780 500 / 5e-157 unknown protein Lus10013425 [exp] 56 / 2e-08 AT3G19780 743 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125800 [exp] 335 / 1e-115 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Potri.019G073000 [exp] 177 / 2e-53 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.013G100000 [exp] 168 / 3e-50 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [flax] [poplar] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Lus10005224 pacid=23155684 polypeptide=Lus10005224 locus=Lus10005224.g ID=Lus10005224.BGIv1.0 annot-version=v1.0 ATGGAAGCTAACTGCTTTCTCACTTCACCCAATCCCTTCCCCAAATCATCTGCAAAACAATTGCTCACCGGAGCTCCGAAGAAACTCCGCCTTGCCCCAT CAGTTACATGTTGTCAATTTTCGGGATCATCTGGTGAGCACAGCCGATCCTTCCTGGACGCCGACTGGCGACGGTTCAGAGCAAGCCTCGTAGCCAACGA GCAATCCTTGATCACGGGAGGAACCACGGCGGCGGATCATCATCCGAACCCTAAACCACTGCCGTTGGTGACAGTAGGGGAGAGATGGGCCCACGCGATC CACGAGCCGGAGAAGGGCTGCCTGCTCATAGCTACGGAGAAGCTGGATGGGGTCCACATCTTCGAACGGACGGTCATCCTCATCCTGTCCACGGGCCCAT TAGGCCCGTTCGGGATCATCCTCAACCGGCCGTCTCTCATGTCCATTAAGGAGACGGCGCAGTATTTGCCGACGGCATTTTCCGGGAGGCCGTTGTTCTT CGGGGGACCGTTGGAAGAAGGGCTGTTTCTGGTGAGGCCCAAAGGAGGGTACGATAACGAGAGCGTGGGGAGGAGCGGGGTTTTCGAGGAGGTGATGAGA GGTCTGTACTACGGGACGAAAGAGTCGGCGGGGTGTGCGGCGGAGATGGTGAAGAGGAACGCCGTCGGAGTTGGGGATTTTAAGTTCTTCGATGGGTACT GTGGTTGGGAGGCTGACCAGCTGAGGGAGGAGATTGACGGTGGTTATTGGACTTTGGCGGCTTGTAGCGCTGGAGTTATTGGGCTGGATAAGGAGGATGC GGCTGGGCTTTGGGAGGATGTTTCCAGTCTTGTCGGCCCAAAAAAGGTTTCCTGA
AA sequence Show only first row Show all	>Lus10005224 pacid=23155684 polypeptide=Lus10005224 locus=Lus10005224.g ID=Lus10005224.BGIv1.0 annot-version=v1.0 MEANCFLTSPNPFPKSSAKQLLTGAPKKLRLAPSVTCCQFSGSSGEHSRSFLDADWRRFRASLVANEQSLITGGTTAADHHPNPKPLPLVTVGERWAHAI HEPEKGCLLIATEKLDGVHIFERTVILILSTGPLGPFGIILNRPSLMSIKETAQYLPTAFSGRPLFFGGPLEEGLFLVRPKGGYDNESVGRSGVFEEVMR GLYYGTKESAGCAAEMVKRNAVGVGDFKFFDGYCGWEADQLREEIDGGYWTLAACSAGVIGLDKEDAAGLWEDVSSLVGPKKVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29240			Protein of unknown function (D...		Lus10005224 [exp]	0	1
AT5G51260			HAD superfamily, subfamily III...		Lus10038847 [exp]	1.7	0.9515
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	4.2	0.8980
AT1G60970			SNARE-like superfamily protein...		Lus10025383 [exp]	7.5	0.8461
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	7.9	0.9244
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	8.1	0.9113
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10011060 [exp]	11.2	0.9230
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	12.0	0.9170
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	13.0	0.9060
AT4G26530			Aldolase superfamily protein (...		Lus10005850 [exp]	19.4	0.8846
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	20.0	0.9014

Compare expression of checked genes

Lus10005224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.