Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01120 669 / 0 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 551 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 223 / 6e-67 CBL cystathionine beta-lyase (.1.2.3) AT1G64660 159 / 3e-43 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030694 [exp] 961 / 0 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10027313 [exp] 211 / 3e-62 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10039016 [exp] 209 / 2e-61 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10000880 [exp] 154 / 2e-41 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 152 / 2e-40 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 137 / 1e-35 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 137 / 1e-35 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 114 / 5e-28 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10001671 [exp] 55 / 1e-08 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086500 [exp] 764 / 0 AT3G01120 720 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G038200 [exp] 209 / 2e-61 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3) Potri.001G084000 [exp] 147 / 9e-39 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 90 / 3e-20 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 55 / 5e-08 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10005226 pacid=23155709 polypeptide=Lus10005226 locus=Lus10005226.g ID=Lus10005226.BGIv1.0 annot-version=v1.0 ATGGCTGTTTCTTCCACCCTCTGCCCTAAGCTCTTCACCGCGTGTCCTTCTCCCTTCGAGTGCCGTTCCGATCCTCACGGCGCCAACCACGGTCAACCTG GACCGGGGAGGTTTTCTTCCTCCCGAGTCAACTCGCTCCGTCCTCTCGGATCTCTCCTCGGCGGAGGCGCCGCCGGAGGATGCTACGGGATGTCGTCTCT CATCCTTAAGTTCCCTCCGAATTTCGTCCGCCAGCTGAGCAACAAGGCGCGCCGGAACTGCAGCAACATCGGCGTCGCGCAGATCGTCGCGGCGAAGTGG TCTGACAACTCGGCCTCCCGTTTCCCTTCGGCGGCTGCGGCTGCTAACGCAGCTGCCGCCGCCGCCACCTCCGCCCCTCCAGCAATCGTCCAGGATCCGG TTGTCGCCGGTGAGAATGGAGCGGTTGCTGAGGGGCAAGAGAGGGGAGGAGATGTACAGGGTTTGACTGACAAGTTGACATACGGTTCGTTTTTGAGCTC CGATGGGAGCATCGCGATTCATGCTGGTGAAAGATTAGGCCGCGGCATTGTTACTGATGCAATCACTACTCCCGTAGTCAATACTGCTGCTTACTTTTTC AAGAAAACTCAACAGCTGATTGATTTCAAGGAGAAACGCCATGAGAGCTTTGAATATGGTCGCTACGGAAATCCGACCACAGTTGTTCTGGAGGAGAAGA TTAGCGCGCTTGAAGGAGCCGAATCAACAGTGATTTTGGCATCTGGGATGTGTGCTAGTACTGCCATGTTAATGGCTCTGGTTCCAGCTGGTGGCCACAT CGTCACTACCACTGATTGTTATAGGAGGACCAGGATCTTCATTGAGAAATTTCTGCCTAAGCTGGGAGTAACGGTTTCTCTTTTCTTCACGGAATCTCCC ACTAATCCCTTCTTGCGGTGTGTTGACATTGAGCTGGTTTCAAAACTTTGCCATGAGAAAGGAGCATTGGTCTGCATAGATGGCACTTTTGCAACACCTC TCAATCAGAAGGCTCTTGCTCTTGGTGCAGATCTTATTTTGCATTCTGCGACAAAGTTCCTTGGGGGCCATAATGATGTACTTGCTGGCTCCATTAGTGG ATCTCTGAAATTAGTTACAGAAATTCGCATGTTGCACCACATTCTGGGAGGAGTTCTTAACCCTAATGCTGCTTACTTGCTTATTCGAGGTATGAAGACA CTGCATCTTCGTGTACAGCAACAAAACTCTACTGCATTGAGGATGGCTCAACTTTTAGAGGCACATCCCAAGGTAAGTCGTGTTTACTATCCTGGACTAA CTAGTCACCCGGAGCATCACATTGCGAAGAAGCAAATGACTGGCTTCGGCGGAGTTGTCAGTTTTGAGATTGATGGAGACCTGCACACCACCGCAAAGTT TGTGGATGCACTGAGAATCCCTTACATCGCTGCATCTTTCGGCGGCTGTGAGAGCATCATTGATCAGCCTGCTATCATGTCTTACTGGGATCTTTCGCCG GCGGAGAGGGAGAAGTATGGGATAAGAGACAACTTGGTGAGGTTCAGCATTGGAGTTGAGGACTTCAACGACATTAAGGCTGATGTGCTTCAAGCCCTGG AAACCATATGA
AA sequence Show only first row Show all	>Lus10005226 pacid=23155709 polypeptide=Lus10005226 locus=Lus10005226.g ID=Lus10005226.BGIv1.0 annot-version=v1.0 MAVSSTLCPKLFTACPSPFECRSDPHGANHGQPGPGRFSSSRVNSLRPLGSLLGGGAAGGCYGMSSLILKFPPNFVRQLSNKARRNCSNIGVAQIVAAKW SDNSASRFPSAAAAANAAAAAATSAPPAIVQDPVVAGENGAVAEGQERGGDVQGLTDKLTYGSFLSSDGSIAIHAGERLGRGIVTDAITTPVVNTAAYFF KKTQQLIDFKEKRHESFEYGRYGNPTTVVLEEKISALEGAESTVILASGMCASTAMLMALVPAGGHIVTTTDCYRRTRIFIEKFLPKLGVTVSLFFTESP TNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLILHSATKFLGGHNDVLAGSISGSLKLVTEIRMLHHILGGVLNPNAAYLLIRGMKT LHLRVQQQNSTALRMAQLLEAHPKVSRVYYPGLTSHPEHHIAKKQMTGFGGVVSFEIDGDLHTTAKFVDALRIPYIAASFGGCESIIDQPAIMSYWDLSP AEREKYGIRDNLVRFSIGVEDFNDIKADVLQALETI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10006074 [exp]	2.0	0.8715
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	3.2	0.9009
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	7.5	0.8668
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	9.9	0.8504
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10005461 [exp]	10.0	0.8558
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	10.2	0.8605
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	16.6	0.8527
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	18.0	0.8660
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	23.7	0.8660
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	24.2	0.8685

Compare expression of checked genes

Lus10005226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.