Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39420 521 / 6e-180 CDC2CAT CDC2C (.1) AT3G01085 480 / 4e-164 Protein kinase superfamily protein (.1) AT1G18670 471 / 2e-159 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 464 / 2e-157 Protein kinase superfamily protein (.1.2) AT5G50860 424 / 3e-143 Protein kinase superfamily protein (.1) AT1G71530 415 / 5e-141 Protein kinase superfamily protein (.1.2) AT1G54610 416 / 6e-140 Protein kinase superfamily protein (.1.2.3) AT1G53050 420 / 7e-140 Protein kinase superfamily protein (.1) AT4G10010 408 / 3e-138 Protein kinase superfamily protein (.1) AT1G09600 408 / 3e-135 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030692 [exp] 991 / 0 AT5G39420 558 / 0.0 CDC2C (.1) Lus10015727 [exp] 486 / 3e-165 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10034726 [exp] 461 / 2e-156 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 459 / 2e-151 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10012805 [exp] 441 / 9e-150 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 433 / 1e-146 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 429 / 6e-145 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 432 / 2e-144 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 421 / 1e-141 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088200 [exp] 588 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.015G061400 [exp] 499 / 1e-170 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 497 / 4e-170 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 446 / 4e-152 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 442 / 3e-150 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 439 / 6e-149 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 432 / 4e-146 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 429 / 9e-145 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 426 / 4e-142 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 425 / 1e-141 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005228 pacid=23155692 polypeptide=Lus10005228 locus=Lus10005228.g ID=Lus10005228.BGIv1.0 annot-version=v1.0 ATGGTGGCGCTGAAGAAAGTGAAATTTGACAATTTCCAGCCGCAGAGCATTCGGTTCATGGCGAGAGAGATATTGATTCTCCGGCGACTTGATCATCCTA ATATCATGAAGTTGGACGGGATCATTACTTCTAGATTGTCCAGTAGTATATATCTGGTGTTTGAGTACATGGAGCATGATCTTGCTGGGTTATCCTCTTC CCCTGATATCAACTTGACCCAACCTCAGGTGAAGTGTTACATGAAGCAGCTACTCCGTGCAATAGAGCACTGCCATCTACGAGGAGTAATGCACAGAGAC ATCAAGATGTCAAACATCTTGGTAAACAACCAAGGAGTCCTGAAGCTAGGCGATTTCGGCCTAGCGAACGTCCTCGTCTCAAAAGGGAAACAGAGGCTCA CCAGCCGTGTGGTGACCCTCTGGTATCGACCTCCGGAGCTTCTACTTGGTTCCACCACTTACGGAGTTTCGGTAGACCTTTGGAGCGTGGGGTGTGTGTT TGCGGAACTCCTTATAGGTAAGCCTCTCCTGAAAGGCAGGACAGAGGTTGAGCAGTTGCATAAGATCTTCAAGCTTTGCGGGTCGCCTCCTGATGAGTTT TGGAAGCAGTATAACCTTCCCAATGCCACCATGTTTCGTCCCCAGCATCCTTACGAGAGCTCTTTAAGGGAGAGGTGCAAGGATTTCCCTCCGGCTGCTA CCGAGTTGATAGAGACATTGCTCTCTGTCGACCCGGAAAAGCGAGGGTCCGCCTCTTCTGCACTCATGTCTCGGTACATCAATTCGAAGCCGTATGCTTG TGATCCGTCGAGCTTGCCAAAGTACCCACCAAACAAGGAAATGGATGCCAAATATAGAGAGGACTCAAGAAGGAAGAGAAGCGGAGTGAAAGCACGAGAA TTGGGAGTTAAGAGGTCGAAAGGAACTCTTAGGGGAAGCAGCTTCAACAAAATTGGTCCGAAAGAGGAGGGGAAGGAGAACACCAACACATCGTTCGGTC CTAAGGCCAACGACATCAATAAAAATGCGAGCCAAGCAAGAGAAGCAGCAGCAGCGATTCGTAGAGAGCTCAACTGGAATACAAGCACGGCTATACTACC ACTAGGGCTGCAAGTGCCAAAAGGTGACCACCAGGCTTATACTGATGGTCCTCCTGCACCTGCAATCACTGCATCGAGCGGCTTTGCATGGACGAAAAAG CGAAAAGATGATCTCTTGACCACGTTATCATACGATAGCAATGAGAGTCAAGTTAGTGGACTTGATGCACCATTCAAGTTCCCCAACTTGAATCCAGGAC TTGAAGGAAAGCACAGTAAACACAAGGACACCATATCCCAGCAGAATCGAGTCGATGCACCATCTTCAGAATCGCTTAAAGCGTTTTTATCATACGTGAT AGCAGACGATATTCCTATGAGCAACACTCGGGAGTTCATTGAGCAATCGGGCAAGGTCGAATTCTCAGGACCACTGTTGTCACAATCTAACAAAGTTGCA CAATCGAATCAGATCGGAGCATTGTTGCAAAAGAACGAGAATCAGATACGAAGAGCAGACAGAAGGTCGAGGTTGGATAGAGGTAATGGCTGCTAG
AA sequence Show only first row Show all	>Lus10005228 pacid=23155692 polypeptide=Lus10005228 locus=Lus10005228.g ID=Lus10005228.BGIv1.0 annot-version=v1.0 MVALKKVKFDNFQPQSIRFMAREILILRRLDHPNIMKLDGIITSRLSSSIYLVFEYMEHDLAGLSSSPDINLTQPQVKCYMKQLLRAIEHCHLRGVMHRD IKMSNILVNNQGVLKLGDFGLANVLVSKGKQRLTSRVVTLWYRPPELLLGSTTYGVSVDLWSVGCVFAELLIGKPLLKGRTEVEQLHKIFKLCGSPPDEF WKQYNLPNATMFRPQHPYESSLRERCKDFPPAATELIETLLSVDPEKRGSASSALMSRYINSKPYACDPSSLPKYPPNKEMDAKYREDSRRKRSGVKARE LGVKRSKGTLRGSSFNKIGPKEEGKENTNTSFGPKANDINKNASQAREAAAAIRRELNWNTSTAILPLGLQVPKGDHQAYTDGPPAPAITASSGFAWTKK RKDDLLTTLSYDSNESQVSGLDAPFKFPNLNPGLEGKHSKHKDTISQQNRVDAPSSESLKAFLSYVIADDIPMSNTREFIEQSGKVEFSGPLLSQSNKVA QSNQIGALLQKNENQIRRADRRSRLDRGNGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10005228 [exp]	0	1
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	1.0	0.9351
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	2.0	0.9297
AT4G00752			UBX domain-containing protein ...		Lus10036564 [exp]	2.2	0.9219
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	2.6	0.9207
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	3.5	0.9255
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	4.5	0.9227
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	6.0	0.9110
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	6.3	0.9159
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	6.5	0.9212
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	6.7	0.8999

Compare expression of checked genes

Lus10005228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.