Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 572 / 0 RNA-binding KH domain-containing protein (.1.2) AT1G14170 372 / 4e-123 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 170 / 3e-45 RNA-binding KH domain-containing protein (.1) AT4G18375 164 / 1e-43 RNA-binding KH domain-containing protein (.1.2) AT1G51580 154 / 1e-39 RNA-binding KH domain-containing protein (.1) AT5G53060 152 / 4e-39 RNA-binding KH domain-containing protein (.1.2) AT2G03110 132 / 6e-36 RNA binding;nucleic acid binding (.1) AT5G64390 102 / 3e-22 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G09560 93 / 2e-19 RNA-binding KH domain-containing protein (.1) AT3G04610 79 / 5e-15 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030689 [exp] 941 / 0 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 449 / 2e-150 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 441 / 3e-148 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 192 / 6e-53 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 190 / 3e-52 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10028237 [exp] 171 / 3e-45 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 164 / 1e-42 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10033557 [exp] 149 / 1e-39 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10035640 [exp] 153 / 6e-39 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085500 [exp] 691 / 0 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 677 / 0 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 491 / 2e-168 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 490 / 3e-168 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 279 / 2e-84 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 201 / 4e-56 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 183 / 5e-50 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 178 / 6e-48 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 170 / 4e-45 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 169 / 5e-45 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10005232 pacid=23155711 polypeptide=Lus10005232 locus=Lus10005232.g ID=Lus10005232.BGIv1.0 annot-version=v1.0 ATGGCTGGTCAAAGGAGCAGTTATGGGAAGCGGTCTCATTCTCACTCTGAATATGATAATGGATCCAACAAAAGAAGGAGCTCAGGTGAAGATAGAGGAG ACCCTTTTGTCATCGATGCTCGGGATACTGTGTACCGGTACCTGTGTCCTGGCCGAAAGATTGGAAGCATAATTGGAAGAGGAGGTGATATTATCAAACA GCTAAGGATAGACACCAAGTCGAAGATTAGAATCGGTGAGACAATCCGAAGCTGTGATGATCGCGTGGTTACCATCTACAGTTCTAGCGACGAGACTAAT ACATACGAAGATTCGGGTGATGAGATTTCACCTGCTCAGGATGCTCTCTTCCGGGTGCATGATAAAGTTGTTGCAGACGATTTGCATGGTGGTGAAGAAA CTCTAAGTGGTCCGCAAGTAACTGCAAGACTTCTTGTTCCCTCTGATCAGATAGGGTGCATTATCGGGAAAGCCGGAGTGATTGTGCAGAATATCCGTAC TGAAACTGGTACGCAGATCCGCATTTTGAAGGATGATCATTTGCCACTTTGTGCGCTAAGCTCCGATGAACTTGTACAGATTTCTGGTGAAGCGGCATCA GTCAAGCAGGCATTATACCGAATTGCTTTTCGGCTCCATGAAAATCCGTCACGGTCTCAACACTTGCTTGCTTCTGCTGTCCCTAACATGTATTCTTCAG GTGGTTCACTGATGGGTCCTACTGCAGGACCACAGTTCGTGGGAATAGCTCCAATAGTGAGTTCTTATGGAGGATATAAAAACGATGTCAGAGATTGGTC ACAGCCTCTGTACTCTACACAGAGAGACGAACTTCCACCTAGAGAATTTTCTCTTCGTATGGTTTGTCCAGCTGCATATATCGGTGGTGTGATTGGAAAA GGAGGTGCCATCATTAATCAAACCAGGCAAGATTCTGGAGCAGGTATTAAGGTTGATAGCTCAGCTGCTGATGGAGATGAATGCTTGATAGTAATTTCGG CTAGGGAGGTGTTTGAAGAGCAATATTCACCAACAATTGATGCAGCATTAAGGTTGCAACCTAGATGTAGTGAGAGAACGGAAAGAGATTCTGGACTTAT CTCCTATACTACCCGGCTGCTTGTACCTTCTTCACGGATTGGATGTCTTCTCGGTAAGGGTGGAGCAATCATCAATGAGATGAGGCAACAAACAAAAGCA ACTATACGTATCCTTGGAAAGGAAGATGTTCCAAAAGTTGCAGGGAAGGATGAGGAGATGGTGCAGATCTCGGGGGACCTTGATGTTGCCAAAGATGCAC TGATACAAATAAGTCAAAGGTTAAGAGCGAATTTCTTTGACAGAGAAGGTGCAACCTCTGCTTTTCTGCCCGTGCTACCCTATGTTCCTGTTTCAGCCGA TGGTCCGGATAACCTAAATTATGACAGCAGAAATGGTAGAAGGGTTGGCCGTGGTTATTCATTTTCTGGTGGTTACCCTTTGAGTGATTATAGTTCCAGT GACACATATGGTAACTACAGTAATTCTCAGATTGGTGGTAGTGGTGCTCCATATGGGGCCTACGGAAGTTATTCCTCTGGACGTACAAGTTCTTCTGGGA TTCTGATGCTTATTTTAACCCCTTACCTTTTCACTCCCATAAAAACAGCTGAGATCCCGAAGCCTGATGCCAGCCTACTGCCTCTTTTGATGATGCCTAC AGCCTTAATTTGGAAGACCCAAGACAGTGTGCCCTTGACGATGTTCCATAGTGGAACCAAACATATTTGGAGAGCCTCAAACATATCTTACCAAATCTTC CTTGTCCCTGACAACAAATGA
AA sequence Show only first row Show all	>Lus10005232 pacid=23155711 polypeptide=Lus10005232 locus=Lus10005232.g ID=Lus10005232.BGIv1.0 annot-version=v1.0 MAGQRSSYGKRSHSHSEYDNGSNKRRSSGEDRGDPFVIDARDTVYRYLCPGRKIGSIIGRGGDIIKQLRIDTKSKIRIGETIRSCDDRVVTIYSSSDETN TYEDSGDEISPAQDALFRVHDKVVADDLHGGEETLSGPQVTARLLVPSDQIGCIIGKAGVIVQNIRTETGTQIRILKDDHLPLCALSSDELVQISGEAAS VKQALYRIAFRLHENPSRSQHLLASAVPNMYSSGGSLMGPTAGPQFVGIAPIVSSYGGYKNDVRDWSQPLYSTQRDELPPREFSLRMVCPAAYIGGVIGK GGAIINQTRQDSGAGIKVDSSAADGDECLIVISAREVFEEQYSPTIDAALRLQPRCSERTERDSGLISYTTRLLVPSSRIGCLLGKGGAIINEMRQQTKA TIRILGKEDVPKVAGKDEEMVQISGDLDVAKDALIQISQRLRANFFDREGATSAFLPVLPYVPVSADGPDNLNYDSRNGRRVGRGYSFSGGYPLSDYSSS DTYGNYSNSQIGGSGAPYGAYGSYSSGRTSSSGILMLILTPYLFTPIKTAEIPKPDASLLPLLMMPTALIWKTQDSVPLTMFHSGTKHIWRASNISYQIF LVPDNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	0	1
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	1.4	0.9250
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	2.0	0.9021
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	2.2	0.8985
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	2.4	0.9237
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	3.3	0.8843
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	3.5	0.8877
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	4.9	0.8865
AT5G51340			Tetratricopeptide repeat (TPR)...		Lus10019124 [exp]	5.3	0.8816
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	5.7	0.9034
AT2G46200			unknown protein		Lus10000549 [exp]	7.9	0.8864

Compare expression of checked genes

Lus10005232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.