Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01150 594 / 0 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT5G53180 545 / 0 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT1G43190 154 / 8e-42 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3) AT4G19610 44 / 0.0002 nucleotide binding;nucleic acid binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030688 [exp] 848 / 0 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10014931 [exp] 540 / 0 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10038820 [exp] 488 / 8e-172 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10028566 [exp] 106 / 1e-24 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 102 / 3e-23 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10043204 [exp] 44 / 0.0002 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10032537 [exp] 42 / 0.001 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085400 [exp] 665 / 0 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.004G123300 [exp] 665 / 0 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.012G029300 [exp] 548 / 0 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.015G020800 [exp] 535 / 0 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.002G066000 [exp] 148 / 7e-40 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 147 / 2e-39 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005233 pacid=23155717 polypeptide=Lus10005233 locus=Lus10005233.g ID=Lus10005233.BGIv1.0 annot-version=v1.0 ATGTCAACATCCGGACCTCCCCAATTCCGGTACACCCAGACCCCATCCAAGGTTCTTCATTTGCGTAACCTGCCATGGGAGTGTTCTGAAGAAGAGCTCG TCGAGCTCTGTAAACCATTTGGAAAGATCGTAAACACCAAGTCCAATGTTGGCGCCAATCGCAATCAAGCCTTTGTCGAATTTGCGGACCCAAACCAGGC GATTCAAATGGTTTCCTACTATGCATCGTCGTCTGATCCTGCACAAGTTCGTGGCAAAGCTGTTTATATACAGTATTCAAACAGACATGAGATTGTCAAT AACAAGGCTCCAGCTGATAATCCCGGTAATGTGTTGCTGGTGACTATAGAAGGGGTAGAAGCTGGTGATGTCAGCATTGATGTTATTCACTTGGTTTTCT CAGCTTTTGGGTTTGTACACAAAATTGCTACTTTCGAAAAAGCTGCTGGCTTTCAGGCTTTGATTCAATTCACCGATGCAGAGACAGCATCTTCAGCAAG GGATGCATTGGATGGCAGAAGTATACCTAGGCAGGTGTACTTGCTCCCAGATCATGTTGATTCATGTAACTTGCGTATTTCATACTCAGCCCATGTTGAT CTGAATATCAAGTTCCAGTCCCACAGGAGCAGGGACTATACAAATCCATACTTGCCTGTGAATCCTACTGCCATTGAAGGAAATCTGCAGCTTGCTGTAG GTCCCGATGGAAAAAGGAAAGAACCGGAGAGTAATGTCCTACTTGCATCTATAGAGAATATGCAATATGCCGTCACTCTAGATGTTTTTCACACTGTGTT TTCAGCTTTCGGTAACGTTCAGAAGATTGCAATATTCGAGAAAAATGGTAGTACTCAGGCACTGATTCAGTATCCAGACGTTGCAACAGCAACTTCAGCA AAAGATGCTTTAGAGGGACACTGCATTTATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCGTACAGTG ATAAGAGCAGAGACTACACAATTCCGGATGCAAGTTCGGCTGCAGCATCATCACAGCAGCATTATCAGGCCGGTCCAGTGTATACTGCCAATGCATATGC ACCTGGTGTGGCACCTCAAGCCTCGACCGGTCAAATGGCTGGTCCAGGACCGGTCCACGGACATGAAGCATCCCCATATCAACAGCATCCTCACATGCCT CCATATGGCACTGCTGGTCCCGAGCCCCCTGGTACTCGGGGCGGTCCAGCGTTTCATGGATCGGCTTCTGGCGGAGGCCATCTAAATATGCGGCCCGGTG ATGCTCCACCTCCAGGCCAGCATCCTTATTACAGCGGATGA
AA sequence Show only first row Show all	>Lus10005233 pacid=23155717 polypeptide=Lus10005233 locus=Lus10005233.g ID=Lus10005233.BGIv1.0 annot-version=v1.0 MSTSGPPQFRYTQTPSKVLHLRNLPWECSEEELVELCKPFGKIVNTKSNVGANRNQAFVEFADPNQAIQMVSYYASSSDPAQVRGKAVYIQYSNRHEIVN NKAPADNPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARDALDGRSIPRQVYLLPDHVDSCNLRISYSAHVD LNIKFQSHRSRDYTNPYLPVNPTAIEGNLQLAVGPDGKRKEPESNVLLASIENMQYAVTLDVFHTVFSAFGNVQKIAIFEKNGSTQALIQYPDVATATSA KDALEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDASSAAASSQQHYQAGPVYTANAYAPGVAPQASTGQMAGPGPVHGHEASPYQQHPHMP PYGTAGPEPPGTRGGPAFHGSASGGGHLNMRPGDAPPPGQHPYYSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	0	1
AT5G59830			unknown protein		Lus10025307 [exp]	2.6	0.8342
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	5.5	0.8201
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	7.3	0.8317
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	7.5	0.8090
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	8.0	0.8259
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	8.3	0.8262
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	9.5	0.7878
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	13.6	0.7814
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	16.4	0.8008
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	17.0	0.8018

Compare expression of checked genes

Lus10005233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.