Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15260 152 / 4e-46 Ribosomal protein L34e superfamily protein (.1) AT3G01170 150 / 7e-46 Ribosomal protein L34e superfamily protein (.1) AT3G06180 60 / 4e-11 Ribosomal protein L34e superfamily protein (.1) AT5G19025 57 / 6e-10 Ribosomal protein L34e superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030686 [exp] 170 / 2e-53 AT3G01170 169 / 6e-53 Ribosomal protein L34e superfamily protein (.1) Lus10034022 [exp] 63 / 1e-11 AT5G19020 353 / 7e-114 mitochondrial editing factor 18 (.1) Lus10004432 [exp] 61 / 4e-11 AT3G06180 241 / 3e-80 Ribosomal protein L34e superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084500 [exp] 194 / 8e-63 AT3G01170 237 / 4e-79 Ribosomal protein L34e superfamily protein (.1) Potri.004G121900 [exp] 187 / 5e-60 AT3G01170 234 / 3e-78 Ribosomal protein L34e superfamily protein (.1) Potri.008G201700 [exp] 60 / 4e-11 AT3G06180 208 / 1e-67 Ribosomal protein L34e superfamily protein (.1) Potri.010G030000 [exp] 60 / 7e-11 AT3G06180 219 / 6e-72 Ribosomal protein L34e superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005234 pacid=23155697 polypeptide=Lus10005234 locus=Lus10005234.g ID=Lus10005234.BGIv1.0 annot-version=v1.0 ATGGCGAATTCTGTCGGCAATAATCATGTGAACAAGTACAGAAAGGTCGCCAATTGTCTGAACAATTGCTCCTTCTCGTCGACCAGCAACCCTATCTGCG ATCGATCTCGATCGGCGGCGGCGGTCGACGTTGCGATCTTCATCGCCGTGGTTTTCGCTTGTGGGTTCTTGCTGTATCCTTACGTCGAGTTTTTGGCAGT CAATTTGATCGATTTCGTTACGGCGGTTCATTGCGTCCTCCAGGATGAGATCGGTAGGAACCCTGTGATATACGGATCTATAGGGATCACTACTTTCTGC GCTGCAATCGGTGGCTGGATTGTCCTTCTTTGGAGACAGAGGAGTGTGTCAAAGCAGCCTCCAACAATGGCGGGGCGGGGGGCCAACAATGGCGGCTCGG TGAAAGATGGGGTGAATAAGAGAGGGCTGTTCGAACTTCCCCGCGATCACCACCGCGAATTGGAGGCTGAATTGAAGAAGATGGCACCACCTAATGGGAG AGCTGTTCTTGTGTTTCGAGCTCGTTGTGGATGTTCGGTTGGGAGATTGGAAGTTCCAGGTGCTAAAAAGGTGAAGAGGATCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10005234 pacid=23155697 polypeptide=Lus10005234 locus=Lus10005234.g ID=Lus10005234.BGIv1.0 annot-version=v1.0 MANSVGNNHVNKYRKVANCLNNCSFSSTSNPICDRSRSAAAVDVAIFIAVVFACGFLLYPYVEFLAVNLIDFVTAVHCVLQDEIGRNPVIYGSIGITTFC AAIGGWIVLLWRQRSVSKQPPTMAGRGANNGGSVKDGVNKRGLFELPRDHHRELEAELKKMAPPNGRAVLVFRARCGCSVGRLEVPGAKKVKRIKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	0	1
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	2.0	0.8681
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	3.9	0.8660
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	4.2	0.8506
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	4.9	0.8776
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	5.2	0.8714
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	5.9	0.8522
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	6.1	0.8833
					Lus10002306 [exp]	6.3	0.7971
AT5G64230			unknown protein		Lus10033177 [exp]	8.1	0.8389
AT3G61320			Bestrophin-like protein (.1)		Lus10037849 [exp]	8.1	0.8192

Compare expression of checked genes

Lus10005234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.