Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28970 251 / 5e-82 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) AT3G12760 94 / 5e-22 unknown protein AT1G15860 42 / 0.0004 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030685 [exp] 540 / 0 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10009599 [exp] 88 / 6e-20 AT3G12760 380 / 3e-135 unknown protein Lus10000875 [exp] 87 / 1e-19 AT3G12760 383 / 3e-136 unknown protein Lus10039198 [exp] 49 / 1e-06 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 49 / 3e-06 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 48 / 4e-06 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 46 / 7e-06 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 43 / 0.0002 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G122100 [exp] 306 / 3e-103 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 241 / 1e-78 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.008G083800 [exp] 89 / 3e-20 AT3G12760 415 / 1e-148 unknown protein Potri.018G112200 [exp] 48 / 3e-06 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 47 / 1e-05 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 45 / 2e-05 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10005235 pacid=23155691 polypeptide=Lus10005235 locus=Lus10005235.g ID=Lus10005235.BGIv1.0 annot-version=v1.0 ATGGACTCGTTCGACTCGAATCGGATTGACATCTCCGAGATTTACCTGCGTTATTGTGGTAAAGTCGTTTACTTTGCAGATTCTTCTTCTTCCTTCAACT GCTCTATTAGATCAGGAAATGCGTACCAGGAAGACAGCAGTTGTCTTGACCATGATGAGCAGCAGAAACTCAAGTTTGCCAGGGATGAGTTAGCTGAGCT CTTCACGATTGTTCAGAAGAAGTTGCATAAGAACCCTAGGTTTTCTATTTTTGATGAACTTCGCAAGCTCATGTCAAATCCAAGGCTGGTGGTAGATTTC TACGACTTCTCGTGCTTTTATGATTTTGTATTCTTTATCTGTCGTGAGAACGGTCAAAAGAATATAACTGTAAGCAAGGCGATTACTGCATGGAGGTTGG TATTACCTGGGAGGTTTAGGTTACTAAACCAATGGTGTGATTTTGTTGAGCGAAATCAACGGTACAATATTTCTGAGGATACTTGGCGGCAAGTTTTAGC TTTTAGTCGATGTGTGCATGAGAATCTTGAAGGCTATGATCCCGAAGGTGCTTGGCCTGTTCTTTTAGATGAATTTGTCGACCATATGTACAGAACATCC GGGTCTAAGAACAATTATACCTCCTCCTTTGATAGTGGAGATCTGGAATTTCATCTATGTGCTGTTGAAGACCTTCTTCCTGGTAAACCATTTCGTCTCT TTTACCGACATTTTCTTCCAGCAACTTCGCCGAAAACTGACTTGTGTTTTGTAGGGCTGAAAGTAACTCCTGGTTTGAAAAGGAAGTCTGGACAGGACAG AATGGAGGTATGTGATCATGCAGAGGTGAATCTTTCTTCGTCAAATTCGAAGAGAAGTAGAGTAGTGAAGGAGAAGATGTCGTTGAGTTGGGTGGATAAC CAGTCATGTGATTCGGGAGATGACGGGATGGATGCAACGAAGCAGAATAGTCCGGTTGGGTGTGCGGTTGAGAATTGCTTGTCGAAGGGGTTTGCTGGGT TGTTTTCTGGGGGTTCTTATCTGAAGCTTGATCAGGAAAGGAGAGTCTCATCTATATAG
AA sequence Show only first row Show all	>Lus10005235 pacid=23155691 polypeptide=Lus10005235 locus=Lus10005235.g ID=Lus10005235.BGIv1.0 annot-version=v1.0 MDSFDSNRIDISEIYLRYCGKVVYFADSSSSFNCSIRSGNAYQEDSSCLDHDEQQKLKFARDELAELFTIVQKKLHKNPRFSIFDELRKLMSNPRLVVDF YDFSCFYDFVFFICRENGQKNITVSKAITAWRLVLPGRFRLLNQWCDFVERNQRYNISEDTWRQVLAFSRCVHENLEGYDPEGAWPVLLDEFVDHMYRTS GSKNNYTSSFDSGDLEFHLCAVEDLLPGKPFRLFYRHFLPATSPKTDLCFVGLKVTPGLKRKSGQDRMEVCDHAEVNLSSSNSKRSRVVKEKMSLSWVDN QSCDSGDDGMDATKQNSPVGCAVENCLSKGFAGLFSGGSYLKLDQERRVSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	0	1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	2.2	0.9369
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10023241 [exp]	2.8	0.9171
AT2G37480			unknown protein		Lus10025314 [exp]	4.9	0.9224
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023011 [exp]	5.1	0.9104
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	5.3	0.9324
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	6.0	0.9108
AT1G28410			unknown protein		Lus10013982 [exp]	6.7	0.9162
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	9.2	0.9316
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	9.4	0.9136
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	10.9	0.9082

Compare expression of checked genes

Lus10005235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.