Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 387 / 1e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 353 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 306 / 5e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 288 / 5e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 271 / 2e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 270 / 8e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 266 / 9e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 260 / 5e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 257 / 5e-83 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 255 / 5e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005238 [exp] 590 / 0 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 504 / 7e-180 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030684 [exp] 454 / 7e-161 AT2G23540 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 386 / 2e-133 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 384 / 1e-132 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 278 / 6e-91 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 276 / 2e-90 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 269 / 3e-87 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10039877 [exp] 261 / 3e-84 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 491 / 6e-175 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 364 / 7e-125 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 332 / 5e-112 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 273 / 4e-89 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 272 / 1e-88 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 271 / 1e-88 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G216400 [exp] 270 / 1e-88 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 265 / 5e-86 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 261 / 1e-84 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 258 / 3e-83 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10005236 pacid=23155681 polypeptide=Lus10005236 locus=Lus10005236.g ID=Lus10005236.BGIv1.0 annot-version=v1.0 ATGGCTCTCCTTTCCGACGTCGGAGCTTTCACCGTTGTTATTATACTTGTGGTGGTGTCATCGGAAATCTGGGTTGCATCCGGCGGTCTGGTAAGCTTTG TATTTGGGGACTCGTTACTTGATCATGGAAACAACAATTACATTGCTACCCTCTCCAAGGCTAATTACCCTCCTAATGGGATTGATTTCGGGGAGCCAAC TGGTCGGTACACTAATGGAAGGACCATTATCGACATTATAGGTCAGGAATTGGGTGCAGAGGATTTCACACCTCCTTACTTGGCTCCCACGACAACAGGT CCTGTAATTCTTCAGGGTGTCAACTATGCTTCTGGTGCTGGAGGAATTCTGAATCAAACTGGCAAGGTTTTCGGTGGTCGGATCAGCATGAATGTTCAAA TTGACAACTTCAGCAAAACAAGGGACGAGATCATAGCCATGATTGGTGAAGTGGAAGCTCAGAAGCTCATGGCGAAGGCGATTTTCGCTGTTTCGATTGG ATCAAACGACTTCCTTAACAACTACCTTACTCCCGTCCTTTCCATCCCCGAGCGTAAACTCATACCTCCTCAGGTTTTCATGGCGACCATGATCGAAACT TTCAGGCTTCAACTCACTAAATTGTACAATTTGGGTGCTCGGAAGTTTGTGGTGGTGAACGTGGGTCCCATCGGGTGCATTCCATACCAGAGAGACGTCA CCCCTGGCGCCGGTGACGAATGCGTCAGCTTCACCAACGAGCTGGCGCAGTCGTACAACGTAAACCTCAGAACGCTTGTTGAGCAACTCGGTGAAGTCTT CGTCGGAGCTCATCTTGTCCATGCCGACGCTTATCGGATTCTCAATGACATTCTCGTCAGATACGATTCATACGGTTTTGAGAATGCAGATGGGGCGTGC TGCCATGTGGCGGGGCCACACGGTGGTCTGATTCCGTGTGGTCCGCCGTCGATAGTTTGTGAAAACAGGTCGAAGTACGTATTTTGGGATCCTTACCATC CGTCCGATGCAACCAATGTTATCATAGCTAAACGTTTACTGGATGGGGACGTTAATGACATTTATCCGATGAACGTCCGGCAGCTTGCTGCAATTCCGCC ATCGTCGATCGGAAAATACAACTAA
AA sequence Show only first row Show all	>Lus10005236 pacid=23155681 polypeptide=Lus10005236 locus=Lus10005236.g ID=Lus10005236.BGIv1.0 annot-version=v1.0 MALLSDVGAFTVVIILVVVSSEIWVASGGLVSFVFGDSLLDHGNNNYIATLSKANYPPNGIDFGEPTGRYTNGRTIIDIIGQELGAEDFTPPYLAPTTTG PVILQGVNYASGAGGILNQTGKVFGGRISMNVQIDNFSKTRDEIIAMIGEVEAQKLMAKAIFAVSIGSNDFLNNYLTPVLSIPERKLIPPQVFMATMIET FRLQLTKLYNLGARKFVVVNVGPIGCIPYQRDVTPGAGDECVSFTNELAQSYNVNLRTLVEQLGEVFVGAHLVHADAYRILNDILVRYDSYGFENADGAC CHVAGPHGGLIPCGPPSIVCENRSKYVFWDPYHPSDATNVIIAKRLLDGDVNDIYPMNVRQLAAIPPSSIGKYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	0	1
					Lus10003536 [exp]	2.0	1.0000
					Lus10011832 [exp]	2.4	1.0000
					Lus10022518 [exp]	2.8	1.0000
					Lus10011425 [exp]	3.2	1.0000
					Lus10027689 [exp]	4.5	1.0000
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017080 [exp]	4.6	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	5.5	1.0000
					Lus10003082 [exp]	7.1	1.0000
					Lus10009727 [exp]	8.1	1.0000
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	10.6	1.0000

Compare expression of checked genes

Lus10005236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.