Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14200 72 / 1e-15 RING/U-box superfamily protein (.1) AT3G13430 62 / 3e-11 RING/U-box superfamily protein (.1.2.3) AT1G26800 61 / 4e-11 RING/U-box superfamily protein (.1) AT5G56340 62 / 6e-11 ATCRT1 RING/U-box superfamily protein (.1) AT5G60820 61 / 8e-11 RING/U-box superfamily protein (.1) AT4G26400 61 / 1e-10 RING/U-box superfamily protein (.1.2) AT3G46620 61 / 1e-10 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G02750 60 / 2e-10 SGR9 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) AT5G08139 60 / 2e-10 RING/U-box superfamily protein (.1) AT1G21960 58 / 3e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011380 [exp] 103 / 5e-27 AT5G53910 61 / 4e-11 RING/U-box superfamily protein (.1) Lus10006449 [exp] 77 / 8e-17 AT4G26400 69 / 2e-13 RING/U-box superfamily protein (.1.2) Lus10011392 [exp] 74 / 1e-15 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036757 [exp] 68 / 8e-14 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10037170 [exp] 68 / 9e-14 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10002637 [exp] 69 / 2e-13 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10012819 [exp] 68 / 2e-13 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10030464 [exp] 66 / 7e-13 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10020258 [exp] 66 / 3e-12 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001500 [exp] 69 / 2e-13 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 66 / 4e-13 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 67 / 1e-12 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 64 / 4e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 62 / 5e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.007G118000 [exp] 62 / 1e-11 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.019G032500 [exp] 63 / 2e-11 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 62 / 2e-11 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 61 / 3e-11 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.016G082500 [exp] 58 / 5e-10 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10005237 pacid=23155705 polypeptide=Lus10005237 locus=Lus10005237.g ID=Lus10005237.BGIv1.0 annot-version=v1.0 ATGGCGTTCTCTAACAATTTGATCCGCGCCAGTGTCACCCTTGCCCACCATCCACTGAATCCCACCGCCGGTCCAGTTCCTTCTCCGGGGACGAAGATAC GCTCAACTTCCTCGACGGCCGTCTACGCCACCGTCCAATACATAGAGCTGAAAAGAAACATCTGCCTGTTACCAGAAGGTAACCTCAGCGTCGTCGGAGA GTCTCTACATTCCTCGCCGACGGCGCGGTCGCCGTTCTATTTAGGCAAGTGCAACATCGATGACTTGTCCTTCCACCTGCGAAATATGCTGAACTGGTTC GGAATATCCGACCCGGAAACAACCCGGGTCCTCGCCAGACGGATCATGGATTTGACTGCGACCCGAGATCATCTGTCACGCATGCGGCTGAATTTGGTCC TGCGTAAGATCGACGACATTGTTTTCGACAAGATGGCCGACTTGGCCGGGGAGGATTGCGCAATCTGCTTGGTCGCCGCTGCCGGCGTCATCGCGGCGGA GATGCCTTGCCGGCATCGGTTCCACTCCGGGTGTATTGCCAGTTGGTTGAAACGGAGCCGTACATGTCCGCTATGTCGATTCGAGCTCCCCTTGGGGACG AGCATTGAAGCGGCGTATCGGAGATTCGCCGACGCAACAACGGAACCAGAATTGTCAAATGTTTCCGACGGAGTCTCAATCTTGGAAATCGATTAA
AA sequence Show only first row Show all	>Lus10005237 pacid=23155705 polypeptide=Lus10005237 locus=Lus10005237.g ID=Lus10005237.BGIv1.0 annot-version=v1.0 MAFSNNLIRASVTLAHHPLNPTAGPVPSPGTKIRSTSSTAVYATVQYIELKRNICLLPEGNLSVVGESLHSSPTARSPFYLGKCNIDDLSFHLRNMLNWF GISDPETTRVLARRIMDLTATRDHLSRMRLNLVLRKIDDIVFDKMADLAGEDCAICLVAAAGVIAAEMPCRHRFHSGCIASWLKRSRTCPLCRFELPLGT SIEAAYRRFADATTEPELSNVSDGVSILEID

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	0	1
					Lus10006287 [exp]	3.5	0.8577
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	3.5	0.8481
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	5.3	0.8772
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	5.9	0.8206
AT4G02160			unknown protein		Lus10010018 [exp]	6.3	0.8149
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	8.0	0.8675
AT3G19920			unknown protein		Lus10010181 [exp]	12.2	0.7895
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	12.8	0.8479
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	13.6	0.8303
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	14.4	0.7916

Compare expression of checked genes

Lus10005237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.