Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 369 / 3e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 357 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 305 / 4e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 293 / 7e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 272 / 8e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 270 / 6e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 266 / 2e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 260 / 3e-84 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 259 / 2e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 251 / 9e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005236 [exp] 594 / 0 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 490 / 4e-174 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030684 [exp] 416 / 8e-146 AT2G23540 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 372 / 9e-128 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 371 / 3e-127 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 270 / 7e-88 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 269 / 2e-87 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 263 / 3e-85 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 258 / 2e-83 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104600 [exp] 488 / 9e-174 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 358 / 3e-122 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 339 / 9e-115 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 274 / 2e-89 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 266 / 1e-86 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G216400 [exp] 263 / 1e-85 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 263 / 2e-85 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 263 / 3e-85 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 262 / 6e-85 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 260 / 4e-84 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10005238 pacid=23155687 polypeptide=Lus10005238 locus=Lus10005238.g ID=Lus10005238.BGIv1.0 annot-version=v1.0 ATGGTTCTTCTTCTTCTGTCGGTCCGAGCTCTCGCGGTTCTGGCAATTCTACAGTCACTGGAAATTTGGGTTGCATGCGGCGAAGAAGAAGGTGGTCTAG TAAGCTTTGTATTTGGGGACTCGTTAGTTGATCCTGGAAACAACAATTACATTGCTACCCTTTCCAGGGCAAACTACCCTCCTAATGGGATTGATTTCGG TAAGCCCACCGGTCGATTCACAAACGGAAGAACCATTGTTGACATTATAGGTCAGGAATTGGGTGCTAAGGATTTGACACCGCCATACTTGGCTCCCACT ACAACAGGTCCTGTAATTCTTCAGGGAGTCAACTATGCTTCCGGTGCCGGAGGAATTCTCAATCATTCCGGAAAGATGTTTGGTGGACGACTCAGCATGG ATGTTCAAATTGACAACTTTGCCAAAACTAAGGATGAAATCATAGCCATGATTGGTCCGGTGGAAGCTGAAGAGCTCATGGAAAGGGCAATCTTTTCGGT TTCAATGGGATCAAATGACATCATTAACAACTACCTTACTCCCATCGTTTCCATCACCGAGCGCAAATTGGTACCCCCTGAAGTTTTCGTACAGACCATG GTCGACACTTACAGACTTCAACTCATTAGATTGTACGATTTGGGAGCTCGAAAGATTGCGGTGGTGAACGTGGGTTCGCTCGGGTGCATTCCGTACCAGA GAGACGTGACCCCTGCCATAGGGGATGAATGCGTAAGGTTCACTAACGAGTTGACACAGTCGTTCAACTCGAAGCTCAAGACGCTTGTTGAGCAACTTGG TGAAGTCCTCATTGGAGCTCACCTAGTCAACGGTGACGCTTATAGGATTTTCAATGACATTATCGATCGATACAAGTTGTACGGTTTTGAGAACGCAAAT GTAGCGTGCTGCCACGCGGCAGGATCGCACGGTGGTTTAATACCGTGCGGTCCGGTGTCGAAAGTTTGCGAGGACAGGTCGAAATACGTCTTTTGGGATC CTTACCACCCGTCCGATGCTGCCAATGTTATCATAGCTAAACGTTTACTGGATGGGGACCTTAATGACATTTCACCGATGAACATCCGTCAGCTTGCTGC AATTCCCCCTTCATCAACATCATCTGTGGCCAAATACAACTAA
AA sequence Show only first row Show all	>Lus10005238 pacid=23155687 polypeptide=Lus10005238 locus=Lus10005238.g ID=Lus10005238.BGIv1.0 annot-version=v1.0 MVLLLLSVRALAVLAILQSLEIWVACGEEEGGLVSFVFGDSLVDPGNNNYIATLSRANYPPNGIDFGKPTGRFTNGRTIVDIIGQELGAKDLTPPYLAPT TTGPVILQGVNYASGAGGILNHSGKMFGGRLSMDVQIDNFAKTKDEIIAMIGPVEAEELMERAIFSVSMGSNDIINNYLTPIVSITERKLVPPEVFVQTM VDTYRLQLIRLYDLGARKIAVVNVGSLGCIPYQRDVTPAIGDECVRFTNELTQSFNSKLKTLVEQLGEVLIGAHLVNGDAYRIFNDIIDRYKLYGFENAN VACCHAAGSHGGLIPCGPVSKVCEDRSKYVFWDPYHPSDAANVIIAKRLLDGDLNDISPMNIRQLAAIPPSSTSSVAKYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005238 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	6.3	0.9723
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024707 [exp]	7.6	0.8503
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	9.4	0.9656
					Lus10017806 [exp]	11.6	0.8050
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	12.8	0.9266
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	14.8	0.9262
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	16.0	0.7157
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032477 [exp]	16.1	0.8078
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	16.6	0.9262
					Lus10028570 [exp]	18.2	0.9262

Compare expression of checked genes

Lus10005238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.