Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48600 1759 / 0 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G54670 126 / 2e-30 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT3G47460 111 / 2e-24 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G27170 74 / 9e-13 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G62410 67 / 8e-11 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G28925 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030681 [exp] 2237 / 0 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10022923 [exp] 246 / 3e-66 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 121 / 2e-27 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 112 / 1e-24 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 92 / 1e-21 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10027215 [exp] 92 / 2e-18 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10013583 [exp] 86 / 2e-17 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10036169 [exp] 78 / 3e-14 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10017012 [exp] 66 / 2e-11 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083200 [exp] 1897 / 0 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.005G224900 [exp] 245 / 4e-66 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.009G155200 [exp] 117 / 3e-26 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G125000 [exp] 68 / 4e-11 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 67 / 8e-11 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10005240 pacid=23155703 polypeptide=Lus10005240 locus=Lus10005240.g ID=Lus10005240.BGIv1.0 annot-version=v1.0 ATGGAATCCGGAGATGAGTTCGTGGCCGGCGAGTCGGCATCCTTCCGATCCCAGAAAGCTGCCAGAGCTCCCAGGCTGTTCATCAAAGAAATGGTCATGG CGAACTTCAAGTCCTACGCAGGGGAGCAACGCGTCGGTCCTTTCCATAAGAGTTTCTCTGCAGTAGTAGGACCTAATGGAAGTGGGAAGAGCAACGTTAT TGATGCAATGTTGTTCGTGTTTGGAAAGCGAGCCAAACAGATGAGGCTTAACAAAGTGTCCGAGCTTATTCACAACTCCACCAATCACCAGAATCTGGGC AGTGCTGCCGTTTCTGTGCACTTCCAGGAGATCATTGACCTGGATGATGGTACCTATGAGGCTGTTCCAGGAAGTGATTTTGTGATTAAGAGAGTTGCAC TTCGGGATAACTCTTCTAAGTATTATATCAATGATCGTTCAAGTAATTTTACAGAAGTCACCAAAAAGCTGAAAGAGAAGGGAGTCGACCTTGATAACAA CCGTTTTCTGATTCTCCAGGGTGAAGTTGAGCAGATCTCATTGATGAAGCCAAAGGCTCAAGGTCCTCACGATGAAGGTTTTCTTGAATACCTGGAAGAC ATCATTGGCACTAACAAATATGTGGAGAAAATCGATGAGATATCCAAGGAATTAGAGGCTCTTAGTGAGAAAAGATCTGGAGTGGTCCAGATGGTGAAGT TAGCTGAGAAAGAAAGAGATGGCTTGGAGGGTGTGAAAAATGAAGCAGAGACATACATGCTTAAAGAGTTATCACACCTGAAATGGCAAGAGAAAGCCTC AAAATTGGCTTTTGAAGATAACTCTACCAAAATGGTTGAAGTGGAAACAAACATAACGGGCCTTGAAGAAAGCCTAAAGGCTGACAGAGGGAAAATTCAA GAGAGTCATAAGACACTGAAAGAGCTCGAGACTGTGCACAACAAATACTTGCGAAGACACGAGGAACTGAACGATGATCTCAGAAAATGTAATGATAAAT TTAAGGAGTTCGAAAGACAAGATGTCAAATACCGGGAGGATGCTAAGCACATGAAGCAAAAGCTCAAGAAACTTGATGATAAGCTTGAAAAGGACTCTTC AAAAATTGAAGCCTTGACAAAGGAGTCTGAGGAATCGACAACTTTGATCCCCCAACTGGAGGAGACTGTCCCAAAACTGCAAAATCTCTTGTCCCAAGAG GAGAAAGTATTGGAAGACATTATAGAGCGTTCTAAAGTTGAAACTGAGGAGTACCGCTCTGAGCTTGCAAAAGTCCGTGCCGAATTAGAACCATGGGAAA AACAGCTGATTGATCACAAAGGGAGACTTGAAGTTGCACGAACAGAGAGCAATCTTTTGAGTGAGAAGCATGATGCTGGTCATGCTGCTTTTGAAAATGC ACGTAAGCAGATGGAGAGCATACATGGAACGATTGGAACAAAAACAGCAATCATTGGGAAGTTGGAAAGCGAAATAGAACAAAAGAAGCTTGAAGCATCA GAATCTCGTAAAGAGGAACAGGAATGCATCAAAGAGCAAGACAGACTGATTCCACTTGAACAAGCTGCGAGGCAGAAGGTTGGAGAACTTAAGTCAATCA TTGATTCGGAGAAGAGTCAGGGGTCTGTCCTTAAAGCAATTTTACATGCCAAGGAATCTAAAAGCATAGAGGGAATATATGGAAGAATGGGGGATTTAGG TGCCATTGATGCAAAATATGATGTTGCAATATCCACGGCCTGTTCTGGACTTGACTATATTGTGGTAGAGACAACTGCTGCAGCCCAAGCATGTGTCGAA TTGCTAAGAAGGGAGAACCTTGGAATCGCAACTTTCATGATACTGGATAAACAAAAGCACTTGTCAACAAAGATGAATGAATCCGTGAGCACTCCTGAGG GAGTTCCACGCCTTTTTGACCTGGTGAGGGTGCAGGATAAAAGAATGAGTGTTGCGTTCTATGCTGCAATGGGAAACACTGTTGTAGCAAAGGACCTGGA TCAGGCAACACGAATTGCATATGGAGGAAGCACAGACTTTCGTCGCGTGGTTACTTTGGATGGTGCACTTTTTGAAAAGTCTGGTACAATGAGTGGTGGA GGAAGTAAGCCCCGGGGTGGGAAGATGGGTACATCAATTCGTGCTGCCACTGTATCTACAGAAGCTGTTTCGAATGCAGAAAAGGAACTCTCTACTTTGG TTGAGAACCTAAATGCCATTGGTAAAAAAATCTCTGATGCCGTGAGACGTTACCAAGCATCAGAGAAGGCCGTCTCAGGTTTGGAGATGGAATTGGCTAA AAGCCAGAAAGAGATAGAAAGTTTGAAATCAGAACATAGTTACCTTGATAAACAACTTGCATCATTGAAGGCTGCCTCACAGCCAAAGAAGGACGAGCTT GATAGATTGAACGAGCTTCAGAAAATAAAATCTGCAGAGGAGAAAGAAATTGATAGCCTTGTTCACGGGTCTAAACAGCTAAAAGAGAAGGCTCTATCTC TTCAGAACAAGATAGAAAATGCTGGTGGGCAGTTGTTGAAGGATCAGAAGTTAAAGGTCAAAAATATTCAATCGGACATTGATAAAAGTTGCTCAGAGAT CAACCGACATAAAGTGCAAATAGAGACAGCACAGAAAATGATAAAGAAGCTCACAAAGGGGATTGAAGATTCAAGGAAGGAAAGGGAACGACTAATTAGT GAAAAGGAGAGGTTCAACGATGTTTTCAAAGACATGACAGCAAAAGCCTTTGATGTTCAAGAGAAGTCTAATAAAATGAAGGAGTTAATTAAAGAACATA CGGAAGTCTTGGATAAGGCAAGAGAGGATTATGAGCAATTGAAGAAGGTGGTTAATGAGTTACGTGCATCAGAGGTTGATACTGATTTCAAACTGAAAGA CCTGAAGAAAGGATACAAGGAGTTGCAAATTAGAGGGAAAGGCTATGCAAAAAAGCTTGATGATTTGCAAAATGCAATCAACCTCCACTTGGAACAAATC GAGAAAGATATGGTCGACCCTGAAAAGCTACAAGCTGCTTTAGCAGACCGGACTCTTTCTGAGGTCACTGACCTGAAGAGGGCCCTTGAAATGGTTACAT TACTGGAAGCGCAAATGAAAGAGATAAATCCCAATCTGGATTCGATTGCAGAATACCGAAGAAAGGTTGCACTTTATAACGAAAGAGTTGAGGAGCTCGA TGCAGTCACTCAAAATCGTGATGATGTAAAAAGGCAGCATGACGAATTGAGAAAGAAGAGGCAAGAATTTCTCGAGTTGGATGAGTTCATGGCAGGATTC AACGCCATATCCTTAAAGTTAAAAGAGATGTATCAGGTTTCTATTTCTAGCTCTGACGATATTTTGCCACAGATGATTACACTGGGAGGCGATGCAGAAC TCGAGCTTGTGGATTCTTTGGATCCTTTCTCTGAAGGTGTTGTATTCAGTGTCAGGCCTCCAAAGAAAAGCTGGAAGAACATTGCTAATCTATCCGGTGG CGAAAAGACTCTCAGTTCCTTGGCTCTAGTCTTTGCACTCCACCATTACAAGCCGACACCACTTTATGTGATGGATGAGATTGATGCTGCGTTAGACTTC AAGAACGTTTCAATCGTGGGACACTACGTCAAGGACCGCACAAAGGATGCTCAGTTCATCATCATAAGCCTTAGGAACAACATGTTTGAGTTGGCAGATA GGCTAGTTGGGATCTACAAAACTGACAATTGCACAAAGAGTATTACCATTAATCCCGGAAGCTTTTCAGTCTGCGAAAATGCTGATGCGTCGTAG
AA sequence Show only first row Show all	>Lus10005240 pacid=23155703 polypeptide=Lus10005240 locus=Lus10005240.g ID=Lus10005240.BGIv1.0 annot-version=v1.0 MESGDEFVAGESASFRSQKAARAPRLFIKEMVMANFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLG SAAVSVHFQEIIDLDDGTYEAVPGSDFVIKRVALRDNSSKYYINDRSSNFTEVTKKLKEKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED IIGTNKYVEKIDEISKELEALSEKRSGVVQMVKLAEKERDGLEGVKNEAETYMLKELSHLKWQEKASKLAFEDNSTKMVEVETNITGLEESLKADRGKIQ ESHKTLKELETVHNKYLRRHEELNDDLRKCNDKFKEFERQDVKYREDAKHMKQKLKKLDDKLEKDSSKIEALTKESEESTTLIPQLEETVPKLQNLLSQE EKVLEDIIERSKVETEEYRSELAKVRAELEPWEKQLIDHKGRLEVARTESNLLSEKHDAGHAAFENARKQMESIHGTIGTKTAIIGKLESEIEQKKLEAS ESRKEEQECIKEQDRLIPLEQAARQKVGELKSIIDSEKSQGSVLKAILHAKESKSIEGIYGRMGDLGAIDAKYDVAISTACSGLDYIVVETTAAAQACVE LLRRENLGIATFMILDKQKHLSTKMNESVSTPEGVPRLFDLVRVQDKRMSVAFYAAMGNTVVAKDLDQATRIAYGGSTDFRRVVTLDGALFEKSGTMSGG GSKPRGGKMGTSIRAATVSTEAVSNAEKELSTLVENLNAIGKKISDAVRRYQASEKAVSGLEMELAKSQKEIESLKSEHSYLDKQLASLKAASQPKKDEL DRLNELQKIKSAEEKEIDSLVHGSKQLKEKALSLQNKIENAGGQLLKDQKLKVKNIQSDIDKSCSEINRHKVQIETAQKMIKKLTKGIEDSRKERERLIS EKERFNDVFKDMTAKAFDVQEKSNKMKELIKEHTEVLDKAREDYEQLKKVVNELRASEVDTDFKLKDLKKGYKELQIRGKGYAKKLDDLQNAINLHLEQI EKDMVDPEKLQAALADRTLSEVTDLKRALEMVTLLEAQMKEINPNLDSIAEYRRKVALYNERVEELDAVTQNRDDVKRQHDELRKKRQEFLELDEFMAGF NAISLKLKEMYQVSISSSDDILPQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDF KNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFSVCENADAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	0	1
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	1.0	0.9821
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10018661 [exp]	2.0	0.9801
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	2.4	0.9769
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10014870 [exp]	3.2	0.9729
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10014315 [exp]	3.5	0.9708
AT2G04235			unknown protein		Lus10016054 [exp]	4.9	0.9707
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	4.9	0.9768
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	6.0	0.9698
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	6.3	0.9677
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	6.5	0.9707

Compare expression of checked genes

Lus10005240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.