Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28920 193 / 3e-59 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT5G39760 115 / 3e-29 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT5G15210 102 / 6e-25 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT1G69600 91 / 6e-21 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT5G60480 86 / 8e-20 ZF_HD ATHB26, ZHD12 ZINC FINGER HOMEODOMAIN 12, homeobox protein 26 (.1) AT5G65410 87 / 1e-19 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT1G75240 84 / 4e-18 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT4G24660 80 / 2e-17 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G02540 79 / 1e-16 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT2G18350 77 / 7e-16 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005244 [exp] 222 / 3e-71 AT5G39760 142 / 1e-41 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10030679 [exp] 204 / 3e-64 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10036753 [exp] 96 / 4e-23 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10010693 [exp] 87 / 1e-20 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010694 [exp] 90 / 2e-20 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 89 / 1e-19 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 84 / 3e-18 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10015900 [exp] 81 / 4e-18 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10014302 [exp] 84 / 5e-18 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126500 [exp] 210 / 1e-65 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.017G082900 [exp] 207 / 1e-64 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.008G086000 [exp] 96 / 2e-22 AT5G15210 167 / 8e-50 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Potri.010G169400 [exp] 95 / 7e-22 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) Potri.007G024100 [exp] 88 / 2e-19 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.002G102900 [exp] 85 / 7e-19 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 85 / 1e-18 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G229600 [exp] 85 / 2e-18 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.019G081300 [exp] 84 / 2e-18 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.005G158800 [exp] 83 / 3e-18 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10005242 pacid=23155679 polypeptide=Lus10005242 locus=Lus10005242.g ID=Lus10005242.BGIv1.0 annot-version=v1.0 ATGGAAGTAGCACCTGCCTCAACTCCCCCGCCGCCGCCACCTACGACCACCACCCCCGCCGCAATCAACAGTCCGTTTTCCAGATCCCCAGATCATGAAA CCGAGTTCCCAACTCAGATCCAACCAGCAGTCAAGCCTTTATCCTTCACCAACGGACTTCTCAAGCGCCGCCGCCTCCCTTCTCCGCCTTCTCCTCCGCC GCCGGAGATCGTTTCCTTCTACAAAGAATGTCAGAAGAACCACGCCGCTTCCTTAGGCGGGCACGCCTTGGACGGATGCGGAGAGTTCATGCCTTCCCCG AATTCAACCCCCTCAGATCCCACCTCCTTGAGATGCGCCGCCTGCGGCTGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAACAACAACAACAACA ACAACAATCAAGCTCCTCCACCTCCTCCCCCGCAGCTAATCGAGTACCAGCCGCACCGCCGCCACCATCCTCTGCCGCCGCCCCTGCCGCCTGGCCGCCA CCACGAGCAGAGGAGTCCGAATTCCGCATCTCCCCCTCCCATTTCGTCTTCCTACTACCCATCCGTGCCTCGCATGCTAATGGCGCTGTCCGGCGAGAAC AACAACAACAACAACAATAATGTTACGAGGAGCGATCCAGGAGCGTCGTCGAGGAAAAGGCACAGGACCAAGTTCAGCCAGATCCAGAAGGAGAGGATGT ACGAGTTTGCAGAGCGGGTGGGGTGGAAGATGGTGAAGAGCGATGAGGAGCTGGTGAAGGAGTTCTGCAACCAAGTGAAGGTTGACAAAGGGGTGCTCAA AGTCTGGATGCATAACAACAAGAACACTTTCGGGAAGCAGCAGGAGCAGCGGGTAATCAGTAGCCATAATCTTCATCATAATCATAATCATCAGTTGAGC AATAATCAGAACAATGGGGATGATCTGAATCACAACAACAGCCAGCAGCAGAGCCAGAATCAGCGTCTGTTTGGGAGTGATAATCATGCTGGGTCATCTT CATCATCCTAG
AA sequence Show only first row Show all	>Lus10005242 pacid=23155679 polypeptide=Lus10005242 locus=Lus10005242.g ID=Lus10005242.BGIv1.0 annot-version=v1.0 MEVAPASTPPPPPPTTTTPAAINSPFSRSPDHETEFPTQIQPAVKPLSFTNGLLKRRRLPSPPSPPPPEIVSFYKECQKNHAASLGGHALDGCGEFMPSP NSTPSDPTSLRCAACGCHRNFHRREPEDNNNNNNNNQAPPPPPPQLIEYQPHRRHHPLPPPLPPGRHHEQRSPNSASPPPISSSYYPSVPRMLMALSGEN NNNNNNNVTRSDPGASSRKRHRTKFSQIQKERMYEFAERVGWKMVKSDEELVKEFCNQVKVDKGVLKVWMHNNKNTFGKQQEQRVISSHNLHHNHNHQLS NNQNNGDDLNHNNSQQQSQNQRLFGSDNHAGSSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	1.0	0.9414
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	1.4	0.8852
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	2.0	0.8742
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	2.4	0.8828
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	4.5	0.8708
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	6.0	0.8431
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	6.6	0.8415
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	8.0	0.8475
AT4G15790			unknown protein		Lus10008380 [exp]	8.2	0.8270
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	9.2	0.8494

Compare expression of checked genes

Lus10005242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.