Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28920 121 / 9e-33 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) AT5G39760 103 / 6e-26 ZF_HD ATHB23, ZHD10 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) AT5G15210 95 / 3e-23 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT5G65410 87 / 3e-20 ZF_HD ATHB25, ZFHD2, ZHD1 ZINC FINGER HOMEODOMAIN 1, ZINC FINGER HOMEODOMAIN 2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, homeobox protein 25 (.1) AT1G75240 83 / 1e-18 ZF_HD ATHB33, ZHD5 zinc-finger homeodomain 5, homeobox protein 33 (.1) AT1G69600 81 / 3e-18 ZF_HD ATHB29, ZFHD1, ZHD11 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1) AT4G24660 80 / 5e-18 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT2G02540 79 / 6e-17 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT2G18350 76 / 3e-16 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT1G14440 73 / 5e-15 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005242 [exp] 228 / 5e-74 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10030679 [exp] 205 / 6e-66 AT5G15210 145 / 2e-42 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10010693 [exp] 86 / 3e-21 AT2G02540 104 / 7e-28 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10010694 [exp] 90 / 6e-21 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10038135 [exp] 88 / 3e-20 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10026010 [exp] 84 / 6e-19 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10015900 [exp] 81 / 1e-18 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10014302 [exp] 83 / 2e-18 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10007147 [exp] 81 / 1e-17 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082900 [exp] 139 / 1e-39 AT3G28920 215 / 8e-68 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.004G126500 [exp] 138 / 5e-39 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.007G024100 [exp] 87 / 8e-20 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.002G102900 [exp] 85 / 2e-19 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.013G108900 [exp] 85 / 3e-19 AT4G24660 171 / 2e-52 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.019G081300 [exp] 84 / 4e-19 AT4G24660 166 / 8e-51 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.004G229600 [exp] 84 / 6e-19 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.005G158800 [exp] 83 / 7e-19 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.005G122500 [exp] 83 / 2e-18 AT2G18350 179 / 2e-54 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Potri.003G000400 [exp] 82 / 2e-18 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [flax] [poplar] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Lus10005244 pacid=23155698 polypeptide=Lus10005244 locus=Lus10005244.g ID=Lus10005244.BGIv1.0 annot-version=v1.0 ATGCCTTCCCCGAATTCAACCCCCTCAGATCCCACCTCCTTGAGATGCGCCGCCTGCGGCTGCCACCGCAATTTCCACCGCCGTGAGCCGGAGGACAACA ACAACAACAACAACAACAATCAAGCTCCTCCACCTCCTCCCCCGCAGCTAATCGAGTACCAGCCGCACCACCGCCACCATCCTCTGCCGCCGCCCATGCC GCCTCGCCGCCACCACGAGCAGAGGAGCCCGAATTCCGCATCTCCCCCTCCCATCTCGTCTTCCTACTACCCATCCGCGCCTCGCATGCTAATGGCGCTG TCCGTCGAGAACAACAACAACAACAACAATAATGTTACGAGGAGCGATCCAGGAGCGTCGTCGAGGAAAAGGCACAGGACCAAGTTCAGCCAGATCCAGA AGGAGAGGATGTACGAGTTTGCAGAGCGGGTGGGGTGGAAGATGGTGAAGAGCGATGAGGAGCTGGTGAAGGAGTTCTGCAACCAAGTGAAGGTTGACAA AGGGGTGCTCAAAGTCTGGATGCATAACAACAAGAACACTTTCGGGAAGCAGCAGGAGCAGCGGGTAATCAGTAGCCATAATAATCATCATAATCATAAT CATCAGTTGAGCAATAATCAGAACAATGGGGATGATCTGAATCACAACAGCAGCCACCAGCAAAACCAGAATCAGTGTCTGTTTGGGAGTGATAATCATG CCGGGTCATGTTCATCATCCTAG
AA sequence Show only first row Show all	>Lus10005244 pacid=23155698 polypeptide=Lus10005244 locus=Lus10005244.g ID=Lus10005244.BGIv1.0 annot-version=v1.0 MPSPNSTPSDPTSLRCAACGCHRNFHRREPEDNNNNNNNNQAPPPPPPQLIEYQPHHRHHPLPPPMPPRRHHEQRSPNSASPPPISSSYYPSAPRMLMAL SVENNNNNNNNVTRSDPGASSRKRHRTKFSQIQKERMYEFAERVGWKMVKSDEELVKEFCNQVKVDKGVLKVWMHNNKNTFGKQQEQRVISSHNNHHNHN HQLSNNQNNGDDLNHNSSHQQNQNQCLFGSDNHAGSCSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	0	1
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005242 [exp]	1.0	0.9414
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	2.8	0.8704
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	3.5	0.8563
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	3.7	0.8555
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	4.5	0.8589
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	5.2	0.8650
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	5.7	0.8646
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10016733 [exp]	7.3	0.8406
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	9.4	0.8103
AT2G26110			Protein of unknown function (D...		Lus10019517 [exp]	10.1	0.8185

Compare expression of checked genes

Lus10005244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.