Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28880 275 / 5e-79 Ankyrin repeat family protein (.1) AT3G13224 66 / 2e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G07710 62 / 1e-09 Ankyrin repeat family protein (.1) AT5G40490 62 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G35450 59 / 5e-09 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT5G57740 60 / 9e-09 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT2G33410 59 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 53 / 2e-08 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT5G66055 57 / 5e-08 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT4G14300 56 / 7e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023911 [exp] 61 / 7e-10 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10041853 [exp] 62 / 2e-09 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10014410 [exp] 59 / 2e-09 AT3G09890 217 / 5e-72 Ankyrin repeat family protein (.1.2) Lus10042321 [exp] 57 / 8e-09 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10021508 [exp] 57 / 8e-09 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10026343 [exp] 56 / 1e-08 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10007721 [exp] 59 / 2e-08 AT1G58470 222 / 6e-68 RNA-binding protein 1 (.1) Lus10032595 [exp] 58 / 2e-08 AT3G13224 357 / 2e-122 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043154 [exp] 58 / 2e-08 AT3G13224 361 / 5e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129100 [exp] 809 / 0 AT3G28880 262 / 2e-74 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 73 / 5e-14 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.007G060400 [exp] 68 / 1e-11 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.003G103400 [exp] 66 / 2e-11 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.005G105800 [exp] 66 / 9e-11 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.002G115000 [exp] 61 / 2e-09 AT1G58470 219 / 7e-69 RNA-binding protein 1 (.1) Potri.001G130500 [exp] 59 / 3e-09 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.001G370300 [exp] 59 / 7e-09 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G344900 [exp] 59 / 8e-09 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G097900 [exp] 57 / 9e-09 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10005246 pacid=23155689 polypeptide=Lus10005246 locus=Lus10005246.g ID=Lus10005246.BGIv1.0 annot-version=v1.0 ATGAGCCTGGAAGTGAGAAAAATTCCTCTAGGAAACGATTCAATCGGAGCTTCAAGCAGTCGAGGATTGATCAAGAGCACAACCGGCGGCAGTAGCAGCT CGTCCGTCGGGAACGGCGCCTTTGAAGCGAGGCTCTCGAAGTTGATACTAGATGATGACAAGGCTGCGCTCCGTTCACTCTGGCCGTCATTGACGGCGGC GACGACGTCGGTAACAAACGGCGCCTTAAACCAAAGAGCTGTGGTCACAAAGCTACTGCACGTGTGCTGCGCGTTCGACGCCGTGAAATGCGCGACGTCG GTTGTGAATGGCGAGCTGGGACCGCCGCCGCTGCTGAACGAGGTGGACGAACAGTCAGGGATGTCGCCGCTGCATAAAGCTGCAGCTGCAAACGCCGCCC GTTGTGTCGAGATGCTGGTGATCAGTAAAAGCGCCCGTACTGATCAGAGGACTAGAGACGGTAACAGACTGCTCCCTTTGGAGCTGTCCTTAGCACGAAT AAGAACTGATGTGACTTGGAATCCTGACAAAATCTCTGTTGAGGACTTGGTGGTTCAACTTAGTGAGAAGGATTTGAAGGCCGTCGATATTCTGTGTGAA CACACAAAGCAAGTCGATGCTGTGGTTTATAAAACTGCCATGGGAGGACATGCAGTGGATTTAGCCATTCTGTTAATGGCAGCAGCTAGGAAGGTGAACG AACTGGTTTTTACCGACCCGGAGTCGAACCACAAGGGGACTTTGTACGAGTGTGTGATTAAGGAAGCCATAGGTTGTGGACCACATGGTACGTCCTCTTC TGCTACTCCCAAACAAAGCTGTGATCAGAGCGAAAGCCAGAGGGCTGGGAAGAGAAAACTTCTGCTCTCCATCGCCAGGTTGCTTCAGCTGTTCGGTGTT GTTGGTATGACTGACTCCACCGCCGGCAAGATGGGTCCACCATTAATTATCAGAGCGTCGAAGGTTGGAGATGAAGACGTACTTGATCTACTTTTGAAGC ACAACTCTGACGTAAACGTTACTGATGAAGACGGAAACTCTGCTCTTCACTGGTGCCTCCGAACTTGGAAGGGAGCATCATGTCCCCAACGGATGAAGAT AATGTGGCTACTTCTGGAAAACGGTGCACGAGGGAATCAAAAGAACAATTGGGGACTAACTGCAGCTCACTTTGCAGCTGAAAATGGCAATTCCCGGGCA ATTCAGGTACTTCTATTGGAAGACCCCTCTTGTATCAACAAGAAAACAGAAATGAAGGAGACGCCACTATATTTTGCTGTCAAGAATGATCATAAGGAAT GTGTGGAGCTTCTTTTACGCTTTGGAGCAAGCACTAATATCTTCAATTTGCGGAAACAGAGACCCATAGACTTGGCAGCATCACAGGATATGCGCTTCCT GCTTAATCAGACACATATTAGCCCAAAGAATCGTTCTTTCTTTGACCCACAAAAGTTCTCTCTTTTGCAAGGAAGCAAGAGAAAGTCCCCGACCTGGAAA GAAACTTACACTTCACTGAATGAAGACAGAGCCAGCAACAGTAAAAATGGATCGCCCACAGAGGAGGAGATCTGCAAGTATTACGACTCTGGGAGTGGGT GCGCCAGAGGCGAAAAATGTTTTTATCTGCATGCTGATGTGTTCCGCCGCACAAAGTCAGCTGCTGCATGCAGGACTGATCAAACGTCCATTCTGCGATG GAATCATGTCAGAAGAATATTCGTTGGAGGTCTCCATCGTGCCTTGGATTCTGATACACTGCATAAAGTTTTTGAAGAGAAATTTGGATCTGTGGAGGAT GCAAGGGTTATGGAGACCCAGAAAGGAGACATGTCACAATCTAGAGGATTTGGCTTCGTTACCTTCAAGGACAAGAAATCTGTTGTTGCAGCTATTGAAG CGCATCACGTCACCATCATGGGAAGGCAAGTTGAAATCAAAACCGTAGTTCCCAAATCCTTCTTACTGGCTGAGTTACAACAATCACTTCAACAACGTTT GAGGCAGAGTGATCCGGATTATGCACAACCGGAGAAACCTAAAGACAATACTCCTGATTCCAATAGGCACTTCAACAGCAAGGAGACTAAAGGTAAAGAT ATTATTGAGAGCCAGGTTACAAGTGAGGAAGAGAAGACTGATAATGATGTCAAAGAAGAAGATGAAGCTACCGTTCTGAAATCATGGGTTGATATTCTTC GCCATGAACAACAACTGGTGCCGCCCAGTTTTTCTCAATCACCTGAGCAAAGTATGCCGTGTTGGCTCAGAATTTTTAAGAACTGGTTGCCTGGCTTCTT AAGACGGGTAACATCCGGGACAGAGGATTATGCTTTGTCTTCTCTGAAATCTGATTTCAAGGCTGCCTTTGGGATGGAGTTGGACCATCCTTCATTCGGT TACTTAAAGCTCGGTAGCTTCCTCAGATGTTTCCCTGACCTTTGCCAACTCAAGTTTGTAGGAAAACCTGCCAATCATATGATACTCCTACCTGTTACCC GCAAGCCCACTCGGCGACTGTTCCAGTCACTCACACTTCCCAACTCTTCATCACATAACAGCAATGAGGATACTTGTGAGAATGACGAGTCCACTGAAGA CCATCTTCTAGAGGTTTCTACCCAAGATGATCCTGAGTCAACTAATACTTGCATCAAGGAGACTCAGACTGTTAACCACCGGGATCTACAGCACAACGAC ATAGCTGCTGGAAACTCTTGCTTTACTGAATTCCTGAAGCCAGATCCCATCTTCCAAGGTAGAACATGGCTGCAGAATGCATGTTTGAAGCCTAGGCCTG AACAGCACCACACCGTTTTGGAGTTCGCCTCCAAAGAGAAGAACAAACATTACGACTCAACGTTCTTCGTTCGTGAATATGACTATTATGAAAGGTACAA AGCATGCAATAGGGAAAGCAGGTGCTTCAGGTGCAACCTCCGTCGGACATTGTGGGCAAACTTGCCGTGCCGGCACTTAGTGTGGTGCACCGATTGCAAG ACGAAGGTAACAGAGGCAGCCGGAAGGTTTCAACATAAGTGTGTTGTGTGTGATTGCGTAGTGCAGAAAATAGAGATTCCCTTGCTTCGGGAATTTCATC ATAGCAATTGCCAGCCAATTAGCGCAGGATCATCCTTCTTCAGCCTGCCGTGGAAATTACAGCGTGATCTCCGGTTGGGTAATCCACCAGGTTTTCCGGC AGAGCAACGGTTTCAATGA
AA sequence Show only first row Show all	>Lus10005246 pacid=23155689 polypeptide=Lus10005246 locus=Lus10005246.g ID=Lus10005246.BGIv1.0 annot-version=v1.0 MSLEVRKIPLGNDSIGASSSRGLIKSTTGGSSSSSVGNGAFEARLSKLILDDDKAALRSLWPSLTAATTSVTNGALNQRAVVTKLLHVCCAFDAVKCATS VVNGELGPPPLLNEVDEQSGMSPLHKAAAANAARCVEMLVISKSARTDQRTRDGNRLLPLELSLARIRTDVTWNPDKISVEDLVVQLSEKDLKAVDILCE HTKQVDAVVYKTAMGGHAVDLAILLMAAARKVNELVFTDPESNHKGTLYECVIKEAIGCGPHGTSSSATPKQSCDQSESQRAGKRKLLLSIARLLQLFGV VGMTDSTAGKMGPPLIIRASKVGDEDVLDLLLKHNSDVNVTDEDGNSALHWCLRTWKGASCPQRMKIMWLLLENGARGNQKNNWGLTAAHFAAENGNSRA IQVLLLEDPSCINKKTEMKETPLYFAVKNDHKECVELLLRFGASTNIFNLRKQRPIDLAASQDMRFLLNQTHISPKNRSFFDPQKFSLLQGSKRKSPTWK ETYTSLNEDRASNSKNGSPTEEEICKYYDSGSGCARGEKCFYLHADVFRRTKSAAACRTDQTSILRWNHVRRIFVGGLHRALDSDTLHKVFEEKFGSVED ARVMETQKGDMSQSRGFGFVTFKDKKSVVAAIEAHHVTIMGRQVEIKTVVPKSFLLAELQQSLQQRLRQSDPDYAQPEKPKDNTPDSNRHFNSKETKGKD IIESQVTSEEEKTDNDVKEEDEATVLKSWVDILRHEQQLVPPSFSQSPEQSMPCWLRIFKNWLPGFLRRVTSGTEDYALSSLKSDFKAAFGMELDHPSFG YLKLGSFLRCFPDLCQLKFVGKPANHMILLPVTRKPTRRLFQSLTLPNSSSHNSNEDTCENDESTEDHLLEVSTQDDPESTNTCIKETQTVNHRDLQHND IAAGNSCFTEFLKPDPIFQGRTWLQNACLKPRPEQHHTVLEFASKEKNKHYDSTFFVREYDYYERYKACNRESRCFRCNLRRTLWANLPCRHLVWCTDCK TKVTEAAGRFQHKCVVCDCVVQKIEIPLLREFHHSNCQPISAGSSFFSLPWKLQRDLRLGNPPGFPAEQRFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28880			Ankyrin repeat family protein ...		Lus10005246 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10013762 [exp]	1.4	0.9419
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10018147 [exp]	13.0	0.9288
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	16.8	0.9025
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10042506 [exp]	22.1	0.9172
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026013 [exp]	23.3	0.8665
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	23.4	0.9157
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	27.6	0.8862
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	29.1	0.9155
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10030800 [exp]	30.7	0.8714
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	33.8	0.8372

Compare expression of checked genes

Lus10005246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.