Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28860 2111 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 1286 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 1223 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1212 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G28010 1179 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G62150 1052 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT3G28390 1049 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT1G02520 1044 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT2G47000 1044 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28380 1023 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030674 [exp] 2361 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1292 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10017271 [exp] 1177 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1173 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10004571 [exp] 1070 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10014427 [exp] 1056 / 0 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10009988 [exp] 1050 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1046 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10005839 [exp] 1043 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G081100 [exp] 2219 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.006G123900 [exp] 1280 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.003G094400 [exp] 1232 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 1225 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 1195 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 1178 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.010G003000 [exp] 1059 / 0 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113500 [exp] 1048 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 1037 / 0 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.017G085000 [exp] 1033 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10005249 pacid=23155695 polypeptide=Lus10005249 locus=Lus10005249.g ID=Lus10005249.BGIv1.0 annot-version=v1.0 ATGGCGGATAGTAGCAGTGTTCCAGAGGCCACCAAGCCGGCATTGCCGGAGGCCGAGAAGAAGAAAGAGCAGAGCCTCCCGTTCCACAAGCTCTTCTGCT TCGCTGACAAGTACGATTGGATGCTGATGGCTTTCGGTAGCGTCGGAGCCATCATCCATGGCTCCTCCATGCCCGTCTTCTTCCTCTTGTTCGGCGAAAT GGTTAATGGCTTCGGAAAGAACCAGTCCGATTTGCCTACTATGATCCACGAAGTATCCAAGTACGCGCTCTACTTCGTCTACCTGGGTCTCATTGTTTGC GTCTCATCCTACGCAGAAATTGGGTGCTGGATGTACAGTGGGGAGAGGCAAGTGAGCAGCTTGAGGAAGAAGTATTTGGAAGCGGTGTTGAAGCAAGACG TAGGGTTCTTCGATACGGACGCAAGGACTGGGGATATAGTCTTCAGCGTCTCCACGGACACTCTCCTTGTCCAAGATGCCATTAGTGAGAAGGTGGGCAA TTTTATCCATTACTTGTCGACGTTCCTGGCCGGGCTGGTGGTTGGATTTGTGTCAGCATGGAAGCTGGCGTTGCTCAGTGTGGCTGTGATCCCCGGAATA GCATTCGCCGGTGGACTCTATGCTTACACTCTCACCGGACTCACGTCCAAGAGCAGGGAGTCTTATGCTCAGGCTGGCATAGTTGCTGAACAGGCTATTG CTCAGGTTCGAACAGTTTACTCGTATGTTGGGGAGACCAAAGCTTTGAATGCCTTTTCAGATGCGATACAGAGCACCTTGAAGCTTGGGTACAAGGCTGG AATGGCCAAAGGATTAGGGCTAGGATGCACCTATGGAATAGCATGCATGTCATGGGCTCTTGTGTTCTGGTATGCTGGTGTTTTCATCAGGAACGGCCAG ACCGATGGAGGAAAGGCGTTCACAGCAATTTTCTCTGCAATTGTTGGTGGAATGAGTTTAGGGCAGTCATTTTCCAACCTTGGTGCATTTAGCAAAGGAA AAGCCGCTGGATACAAGTTGATGGAAATAATCAACCAAAAGCCTACCATCGTACAGGATTCATTGGATGGGAAATGCTTGGATGAGGTTACTGGGAACAT TGAGTTGAAGAATGTGACTTTTAGCTACCCATCTAGGCCAGATGTCGTTATCTTCAGAGATTTCACAATCTTCTTTCCTGCTGGCAAGACTGTTGCTGTT GTAGGCGGCAGTGGATCAGGGAAAAGCACTGTTATTTCCTTGATAGAGAGGTTTTATGATCCTAGCCAGGGACAAATTTTGCTGGATAATGTGGATATTA AAACCTTGCAACTCAAGTGGTTACGTGATCAGATAGGCTTGGTGAACCAGGAACCGGCTCTGTTTGCTACCACTATACTCGAGAACGTACTCTATGGGAA GCCAGATGCAACCATGGATGAAGTAGAGGCTGCTGCTTCTGCTGCAAATGCTCATAGCTTCATCACCCTGCTTCCCAATGGATATAATACTCAGGTGGGA GAGCGAGGAGTGCAGCTCTCTGGTGGCCAGAAACAGAGGATTGCAATAGCAAGAGCTATGTTGAAGAATCCTAAAATCCTTCTACTTGATGAAGCAACAA GTGCTCTCGATGCAGGCTCCGAGAGCATCGTTCAGGAAGCCTTGGATCGTCTCATGGTAGGAAGAACAACTGTTGTAGTTGCCCATCGACTTTCCACTAT CAGGAATGTCGATACCATTGCAGTCATCCAACAAGGGCAAGTAGTGGAGACCGGAACCCATGAAGAACTGATAGCCAAAGCAGGTGCCTATGCCACTTTG ATCAGATTTCAAGAAATGGTGAGAAACAGAGAATTCGCAAACCCATCAACCCGACGATCTCGCTCATCGCGGCTCAGCCACTCACTTTCAACAAAGTCGC TTAGCCTCCGATCTGGAAGTCTCCGCAACTTGAGCTATTCCTACAGTACTGGAGCAGATGGGCGCATTGAGATGGTCTCAAATGCCGAGACAGATCGTAA AAATCCGGCACCGAAAGGGTACTTCTTCAGGCTGCTCACACTAAATGCTCCGGAGTGGCCATACTCGATAATGGGAGCTGTAGGATCTGTGCTGTCAGGT TTCATTGGTCCAACATTTGCCATAGTCATGAGCAATATGATTGAGGTTTTCTACTATAAAAATCCACAATCAATGGAGAGGAAGACAAAGGAGTACGTTT TCATCTACATAGGTGCTGGCATCTATGCTGTTGTGGCATATTTGATTCAACATTACTTCTTCAGCATAATGGGAGAGAACTTAACTACAAGAGTTAGAAG AATGATGCTTGCCGCAATTCTGAGGAATGAAGTCGGATGGTTCGATGAAGAAGAGCACAACTCAAGCCTGGTTGCAGCGAGATTAGCAACAGATGCTGCA GATGTAAAATCTGCAATAGCTGAGAGGATATCTGTGATACTCCAGAACATGACCTCTCTCCTCACCTCATTCATAGTGGCTTTCATCATTGAATGGAGAG TCTCACTTCTCATTCTGGGGACCTTCCCTCTACTGGTCCTTGCCAACTTTGCTCAGCAACTCTCTCTCAAAGGATTTGCAGGGGACACAGCCAAAGCCCA TGCAAAAACCAGCATGATTGCAGGGGAAGGAGTAAGCAATATCAGAACCGTTGCTGCGTTTAATGCTCAAGACAAGATCCTATCTTTATTCTGCCACGAG CTTCGCGGCCCACAACTTCATAGCCTAAAGAGAAGCCAGATCTCTGGTCTCCTCTTCGGCATATCTCAACTTGCTCTCTATGCATCCGAAGCTCTGATAT TATGGTACGGTTCTCATCTCGTGAGCAGAGGCGTATCGACATTCTCCAAAGTTATCAAGGTGTTCGTTGTCTTGGTCGTGACGGCCAATTCAGTTGCAGA AACTGTCAGCCTTGCTCCCGAAATAATCAGGGGTGGTGAAGCAGTCGGTTCGGTTTTCTCAATCCTGGACAGGTCGACTCGGATCGATCCTGATGATTCC GAGGCTGAACCGGTTGAATCGATCCGAGGAGAGATTGAACTTCGGCATGTTGATTTTTCATACCCGACAAGGCCGGATGTTCCAGTGTTCCAAGATTTAA ACTTGAGGATTCGTGCCGGGCAGAGTCAGGCACTCGTCGGAGCAAGTGGATGCGGGAAGAGTTCCGTGATCGCATTGATCGAGCGTTTCTACGATCCATC TGGTGGAAAAGTTATGATCGATGGAAAAGACATTCGAAGACTGAACTTAAAATCCCTAAGGCAGAAGATCGGATTGGTGCAACAAGAGCCTGCTCTATTC GCATCGAGCATATTCGAAAACATCGCGTATGGGAAAGAAGGCGCGACGGAAGCTGAGGTCATCGAAGCAGCGCGTGCAGCAAACGTACACGGATTTGTGA GTGCATTGCCCGACGGGTACAAAACTCCGGTCGGAGAGAGAGGAGTGCAGCTGTCGGGAGGACAAAAGCAGAGGATAGCGATTGCGAGAGCCGTTCTTAA GGACCCGACGATCCTGTTACTTGACGAAGCTACGAGCGCGCTCGATGCTGAGTCAGAATGTGTGCTGCAAGAAGCTCTGGAGAGGCTAATGAGGGGGAGA ACAACGGTGCTGGTGGCGCACAGGTTGTCGACGATACGGGGCGTGGATTGTATCGGAGTGGTGCAAGACGGGAGGATTGTGGAGCAAGGGAGTCATCGTG AGTTGGTTAGCAGGCCTGATGGTGCGTATTCGAGGCTATTGCAGCTACAACATCACCACATTTGA
AA sequence Show only first row Show all	>Lus10005249 pacid=23155695 polypeptide=Lus10005249 locus=Lus10005249.g ID=Lus10005249.BGIv1.0 annot-version=v1.0 MADSSSVPEATKPALPEAEKKKEQSLPFHKLFCFADKYDWMLMAFGSVGAIIHGSSMPVFFLLFGEMVNGFGKNQSDLPTMIHEVSKYALYFVYLGLIVC VSSYAEIGCWMYSGERQVSSLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGI AFAGGLYAYTLTGLTSKSRESYAQAGIVAEQAIAQVRTVYSYVGETKALNAFSDAIQSTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQ TDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVQDSLDGKCLDEVTGNIELKNVTFSYPSRPDVVIFRDFTIFFPAGKTVAV VGGSGSGKSTVISLIERFYDPSQGQILLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENVLYGKPDATMDEVEAAASAANAHSFITLLPNGYNTQVG ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGAYATL IRFQEMVRNREFANPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPKGYFFRLLTLNAPEWPYSIMGAVGSVLSG FIGPTFAIVMSNMIEVFYYKNPQSMERKTKEYVFIYIGAGIYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAA DVKSAIAERISVILQNMTSLLTSFIVAFIIEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHE LRGPQLHSLKRSQISGLLFGISQLALYASEALILWYGSHLVSRGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDS EAEPVESIRGEIELRHVDFSYPTRPDVPVFQDLNLRIRAGQSQALVGASGCGKSSVIALIERFYDPSGGKVMIDGKDIRRLNLKSLRQKIGLVQQEPALF ASSIFENIAYGKEGATEAEVIEAARAANVHGFVSALPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGR TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHRELVSRPDGAYSRLLQLQHHHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10005249 [exp]	0	1
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10030674 [exp]	1.4	0.8656
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	4.5	0.8474
AT3G07210			unknown protein		Lus10038194 [exp]	7.5	0.8162
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	9.6	0.8161
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	9.9	0.7822
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	15.0	0.7861
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	16.9	0.7807
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	18.0	0.7929
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	24.7	0.7880
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	26.4	0.7814

Compare expression of checked genes

Lus10005249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.