Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28760 523 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030673 [exp] 234 / 1e-71 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G080300 [exp] 586 / 0 AT3G28760 528 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01959 [flax] [poplar] DHQS 3-dehydroquinate synthase II
Representative CDS sequence Show only first row Show all	>Lus10005250 pacid=23155719 polypeptide=Lus10005250 locus=Lus10005250.g ID=Lus10005250.BGIv1.0 annot-version=v1.0 ATGGCCGTCTCGGTGCCTTGTTGTGCTCCAGTCCCAGCATTCCTCCAAAAGTTCCCCTCTTTGCTTACCCAAACTGCTGCAATCCACTGGAACAACTACT CCAGTAAGCCAGTATCCCTGTCGCCGAATTCACATCGCACAAAGTGTTCTTCTTCTTCTTCTTCTTCAATTTCTGTCTCGGCGATGCCGTCCAAGTCAAA GAAGGTATGGGTATTTACACAGAGCAAGCAAGTCATGACTGCTGCCGTCGAGAGAGGATGGAACACGTTCGTCTTCTTATCCCAGCATCGATTTATCGCC GATGAATGGTCCTCAATTGCTTTGATTCGTCCGCTGTTTATTGAGGAAGGAGAGGTTTTGGATGGTGAGAAGAGGAAAGTGGCGACAATTTTTCAGGTTT CAACTCCGGAGGAGTTACAGCAGCTGAATCCAGATAGTACAAAGAATGAAAATGTTATAGTTGACTTCCTAGATTGGCAGGTAATACCTGCAGAGAACAT TGTAGCAGCATTCCAAGGAAGCCAGAAAACGGTGTTTGCCATCTCAAAATCGCCTTCCGAGGCACAGGTTTTTCTTGAGGCTTTAGAGCATGGGTTGGGT GGAGTTATTCTAAAAGTTGAAGATGTCGGGCCTATACTTGAGCTCAAGGACTATATTGACAGAAGGAATGAAGCACAAAATGCATTGAGTTTAACACGAG CTACTATAACTCGGATAGAAGCAGTTGGAATGGGCGATCGAGTTTGTGTGGATCTCTGCAGCCTGATGAGACCTGGCGAAGGACTTTTGGTCGGTTCGTT TGCTAGAGGACTATTCCTTGTTCACTCAGAATGCCTGGAGTCTAATTACATTGCAAGCCGGCCTTTTCGTGTCAATGCTGGTCCAGTGCATGCATATATC TCAGTCCCCGGAGGGAAAACATGTTACCTCTCGGAACTCAAGGCAGGGAAAGAAGTTATCATAGTTGATCAGAATGGCCATACACGAACCGCAATTACAG GACGAGTCAAGATCGAGACTCGGCCTCTTGTCTTGGTGGAGGCAAAGGTGGAATCGGATAGTGCGACGACATATACAATCTTTCTGCAGAATGCTGAAAC TGTTGCTTTAATACCTCCTTGCAAAGCTAATGGAGCGCAAGTAAGAGCTGTTCCAGTGACTTCACTGAAAGTTGGCGAGGAAGTGTTGTTGAGAGTTCAA GGAGGTGCTCGCCATACAGGAATAGAGATAGATGAATTCATTGTCGAAACTTGA
AA sequence Show only first row Show all	>Lus10005250 pacid=23155719 polypeptide=Lus10005250 locus=Lus10005250.g ID=Lus10005250.BGIv1.0 annot-version=v1.0 MAVSVPCCAPVPAFLQKFPSLLTQTAAIHWNNYSSKPVSLSPNSHRTKCSSSSSSSISVSAMPSKSKKVWVFTQSKQVMTAAVERGWNTFVFLSQHRFIA DEWSSIALIRPLFIEEGEVLDGEKRKVATIFQVSTPEELQQLNPDSTKNENVIVDFLDWQVIPAENIVAAFQGSQKTVFAISKSPSEAQVFLEALEHGLG GVILKVEDVGPILELKDYIDRRNEAQNALSLTRATITRIEAVGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYI SVPGGKTCYLSELKAGKEVIIVDQNGHTRTAITGRVKIETRPLVLVEAKVESDSATTYTIFLQNAETVALIPPCKANGAQVRAVPVTSLKVGEEVLLRVQ GGARHTGIEIDEFIVET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28760			unknown protein		Lus10005250 [exp]	0	1
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	1.0	0.9181
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	1.4	0.9180
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	3.2	0.8509
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	4.2	0.9049
AT3G25680			unknown protein		Lus10021714 [exp]	4.7	0.8497
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	4.9	0.8489
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	6.0	0.8851
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	6.3	0.8523
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	7.9	0.8524
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10026832 [exp]	8.6	0.8112

Compare expression of checked genes

Lus10005250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.