Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15140 371 / 2e-126 Galactose mutarotase-like superfamily protein (.1) AT3G47800 353 / 2e-121 Galactose mutarotase-like superfamily protein (.1) AT3G17940 305 / 1e-102 Galactose mutarotase-like superfamily protein (.1) AT3G01260 247 / 4e-79 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030673 [exp] 611 / 0 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 563 / 0 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 563 / 0 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 358 / 2e-123 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 305 / 1e-102 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 268 / 2e-88 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 261 / 3e-85 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 131 / 4e-37 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 50 / 1e-07 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129700 [exp] 432 / 2e-152 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 426 / 4e-150 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 416 / 2e-146 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 404 / 2e-141 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 371 / 2e-128 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 324 / 3e-110 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 304 / 4e-102 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10005251 pacid=23155677 polypeptide=Lus10005251 locus=Lus10005251.g ID=Lus10005251.BGIv1.0 annot-version=v1.0 ATGTCTCTCAAGCTCACCAACTATGGCGCCCATATCATCTCTTTCGTCATCCCTGACAAATCTGGCAACCTCAGCGACGTCGTTCTTGGCTATGATACTC CTGAGGCTTACCAGAACGACACGCAGAGCTTCGGAGCCACGGTTGGAAGAGTTGCCAACAGAATCGCCGGCGCTCAGTTCACTCTGAATGGAACTGTTGT CAAATTGGTACCCAACGAGGGCAAGAACGTGCTTCACGGTGGCCCAGTTGGGTTCTCCAAAGTGGTTTGGAAAGTGAACGAGTACCAGCCCAATGCCTCC AGACCTTTTGTTGAGTTCCTCTACATCAGCAAAGATGGCGATCAAGGATTCCCCGGAGACCTAGTAGCAGTGGTGAAGTACACACTCCTAGAGTACAACC AATTGAGCATCAAGATGAAAGCCAAAGCACTCAACAAACCGACTCCGGTCAACCTAATCAACCACGCCTACTGGAACCTGGGTGGCCACGCCAGCGGAGA CATCCTATCCGAAGAGCTTCAAATATTCTCCTCACACTACACCCCTGTCGACGACCAGCTCATCCCTACCGGCAAAATCGACACAGTGGTAGGAACCCCT TTCGATTTCCTGAAACCCAAACCGGTCGGGGAGAGAATCGGGCAGCTCAAACTCGGGTACGACCTCAACTACGTGCTGGACGTGAGTCCTGTACACGCAC GAGGGAGCAAGAGAGGAATGAGAAAGGCTGCGACGGTTCATGACAAAAAATCAGGGAGGGTGATGGAAGTGTTCACGAACCAACCGGGGATGCAGCTGTA TTCGAGTGGACAGCTCGGTGACACCAAGGGGAAGAATGGAGTGGTGTACAAGAGACATCATGGTTTGTGCTTGGAGACTCAGGCTTTCCCTGATGCTGTC AATCATCCTAACTTCCCTTCCACCATTGTTACTCCTTCCAAGCCTTATGATCACCAGATGTTGATTAGGTTTTCCACTACTTAA
AA sequence Show only first row Show all	>Lus10005251 pacid=23155677 polypeptide=Lus10005251 locus=Lus10005251.g ID=Lus10005251.BGIv1.0 annot-version=v1.0 MSLKLTNYGAHIISFVIPDKSGNLSDVVLGYDTPEAYQNDTQSFGATVGRVANRIAGAQFTLNGTVVKLVPNEGKNVLHGGPVGFSKVVWKVNEYQPNAS RPFVEFLYISKDGDQGFPGDLVAVVKYTLLEYNQLSIKMKAKALNKPTPVNLINHAYWNLGGHASGDILSEELQIFSSHYTPVDDQLIPTGKIDTVVGTP FDFLKPKPVGERIGQLKLGYDLNYVLDVSPVHARGSKRGMRKAATVHDKKSGRVMEVFTNQPGMQLYSSGQLGDTKGKNGVVYKRHHGLCLETQAFPDAV NHPNFPSTIVTPSKPYDHQMLIRFSTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	0	1
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	1.0	0.9757
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	2.4	0.9699
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	4.5	0.9687
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	4.9	0.9656
AT1G06930			unknown protein		Lus10009096 [exp]	5.2	0.9273
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	6.0	0.9699
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	6.3	0.9660
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	7.6	0.9206
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	7.9	0.9634
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	9.9	0.9542

Compare expression of checked genes

Lus10005251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.