Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28715 691 / 0 ATPase, V0/A0 complex, subunit C/D (.1.2) AT3G28710 691 / 0 ATPase, V0/A0 complex, subunit C/D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030672 [exp] 729 / 0 AT3G28715 693 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10033022 [exp] 619 / 0 AT3G28715 590 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2) Lus10015361 [exp] 126 / 3e-34 AT3G28715 120 / 2e-32 ATPase, V0/A0 complex, subunit C/D (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079200 [exp] 707 / 0 AT3G28715 691 / 0.0 ATPase, V0/A0 complex, subunit C/D (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01992 [flax] [poplar] vATP-synt_AC39 ATP synthase (C/AC39) subunit
Representative CDS sequence Show only first row Show all	>Lus10005252 pacid=23155701 polypeptide=Lus10005252 locus=Lus10005252.g ID=Lus10005252.BGIv1.0 annot-version=v1.0 ATGTACGGATTCGAAGCTATGAGTTTCAACGTCCACGGTGGCTACCTGGAGGCCATCGTCAGGGGACACAGATCGGGCCTTCTCACCGCTGCTGATTACA ACAATCTCTGCCAGTGCGAGTCCCTTGATGACATCAAGATGCACCTCTCTGCCACCGAGTACGGTCCCTATCTTCAGAATGAACCTTCTCCATTGCATAC CACTACAATTGTGGAGAAATGCACCCTTAAGCTTGTGGATGAGTACAAACACATGCTATGTCAAGCTACGGAGCCTTTGTCTACCTTCCTTGAGTATTGC ACGTATGGTCATATGATAGACAATGTTGTTTTGATTGTGACTGGAACTTTGCATGAGAGGGATGTGCAAGAGCTATTGGAGAAATGCCACCCTCTTGGCA TGTTTGACAGCATTGCCACCCTGGCTGTCGCCCACAACATGAGGGAACTTTACCGTCTGGTGCTTGTTGACACACCATTGGCTCCTTACTTCTCCGAGTG CATCACTTCAGAGGACTTGGATGATATGAATATTGAGATCATGAGGAATACACTTTACAAGGCATATCTGGAAGATTTTTACAAGTTTTGCCAGAAACTT GGCGGAGCTACCGGCGAGATTATGTCTGATCTTCTTGCATTTGAAGCTGACAGGAGAGCTGTTAATATCACCATAAACAGCATTGGCACAGAGCTTACTC GTGATGACCGAAGGAAACTGTACTCCAATTTTGGCCTACTTTATCCTTATGGACATGAGGAACTTGCTGTCTGCGAGGACTTGGACCAGGTCCGCGGTGC TATGGAAAAGTACCCTCCCTACCAGGCAATATTCTCTAAGCTATCATACGGTGAAAGCCAGCTTCTTGACAAAGCATTTTACGAGGAAGAAGTCAAAAGG CTCTGCTTGTCTTTTGAGCAGCAGTTCCACTATGGGGTTTTCTTCGCATACATAAGATTGAGGGAACAGGAGATTAGGAACCTGATGTGGATATCCGAAT GCGTCGCCCAGAACCAGAAGTCGAGAGTCCACGACAGTGTTGTCTTCATATTCTAG
AA sequence Show only first row Show all	>Lus10005252 pacid=23155701 polypeptide=Lus10005252 locus=Lus10005252.g ID=Lus10005252.BGIv1.0 annot-version=v1.0 MYGFEAMSFNVHGGYLEAIVRGHRSGLLTAADYNNLCQCESLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYC TYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAHNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKL GGATGEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDLDQVRGAMEKYPPYQAIFSKLSYGESQLLDKAFYEEEVKR LCLSFEQQFHYGVFFAYIRLREQEIRNLMWISECVAQNQKSRVHDSVVFIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	0	1
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	2.4	0.8957
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10031032 [exp]	2.8	0.9042
AT1G79990			structural molecules (.1.2.3.4...		Lus10035895 [exp]	3.0	0.8780
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	4.0	0.9011
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	4.1	0.8711
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	8.1	0.8858
AT1G35510			O-fucosyltransferase family pr...		Lus10009450 [exp]	8.4	0.8221
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	8.8	0.8781
AT3G08670			unknown protein		Lus10025209 [exp]	9.8	0.8780
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10005057 [exp]	10.6	0.8721

Compare expression of checked genes

Lus10005252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.