Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01270 525 / 0 Pectate lyase family protein (.1) AT5G15110 523 / 0 Pectate lyase family protein (.1) AT1G14420 482 / 2e-168 AT59 Pectate lyase family protein (.1) AT2G02720 453 / 3e-157 Pectate lyase family protein (.1) AT4G13710 437 / 8e-151 Pectin lyase-like superfamily protein (.1.2) AT3G07010 435 / 9e-151 Pectin lyase-like superfamily protein (.1) AT5G48900 433 / 7e-150 Pectin lyase-like superfamily protein (.1) AT1G67750 427 / 8e-148 Pectate lyase family protein (.1) AT5G63180 426 / 7e-147 Pectin lyase-like superfamily protein (.1) AT4G13210 422 / 4e-145 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030670 [exp] 853 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 633 / 0 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10036721 [exp] 505 / 1e-177 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 498 / 7e-175 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10015359 [exp] 477 / 3e-169 AT3G01270 396 / 2e-137 Pectate lyase family protein (.1) Lus10030791 [exp] 470 / 4e-164 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 468 / 2e-163 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10022817 [exp] 428 / 2e-147 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 425 / 6e-147 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078400 [exp] 636 / 0 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.004G124100 [exp] 629 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.015G064700 [exp] 530 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.008G148800 [exp] 529 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 427 / 1e-147 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 427 / 1e-147 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.012G091500 [exp] 424 / 2e-146 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 424 / 6e-146 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 421 / 1e-144 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 421 / 2e-144 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10005254 pacid=23155700 polypeptide=Lus10005254 locus=Lus10005254.g ID=Lus10005254.BGIv1.0 annot-version=v1.0 ATGGGAAGGCTCATGTTCATTCTGTTCTTCTCATTTGCAACGATAATTCCTTGTCTTCGAGCACAAGATGCTACCAAAATCAAGCCACAGTATGACGAGG TATGGCAAAAGAGAGCAGAGCAGGCTAAGAGGAACCTCATGGCAGCTTACGTTCCGAATCCGTTGGACTCCGACGACGATGTCTCGGATACTCCATCTTC GAATAGTGGAAGCTCTCGGAAGAGCATGAGTGGAAATGAAGATGTAGGTAGCAAGGAGGGAACGATGAAGAGCAAAACAAGGAGGAGTCTGAAGCAAGGC AAGAGGAAGTACCTAGGGCCATGCGCAACGACCAACCCAATGGACGCATGCTGGAGGTGCAAAGAGGATTGGGCAACCAATCGTCGCCAGATGGCGAAAT GCGCATTGGGGTTCGGAAGGAAGACTACCGGTGGCATCGACGGGCGGTTGTATGTGGTCACTGATAACTCCGACGACGACTTGCTCAATCCTGTGCCAGG GACTTTGAGGTACGCCGTGATCCAAGTCGAGCCGTTGTGGATCATATTCGCTCACGACATGAACATCAAGCTAAACGGAGAGCTTCTGATGACGGGCAAC AAGACAATCGATGGACGTGGAGCCAACGTCCACATTGCCTATGGAGCTGGGATCACTGTCCAGTTCGTGGAGAATGTGATCATCCACGGGATCCGTGTCC ATCACGTCGTCCCCACGAACGGCGGGATGATAAGGGATTCCGTGGATCATTATGGTCTCAGGACTCAGAGCGATGGGGATGGGATATCGATCTTTGGTTC CACCAATGTTTGGATTGATCATGTGTCCATGTCTCAGTGCACTGATGGGCTCATTGATGCCATTCAAGGTTCAACTGCTATCACCATCTCTAATTGTCAC TTCACCCACCATAATGATGCGATCTTGTTGGGGGCAAGTGACAGCTTCTCCGGAGATCAATTCATGCAGATAACTGTTGCGTACAATCATTTTGGACAAG GACTAGTTCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTCAACAATGACTACACCCATTGGCGTCTCTACGCCATTGGTGGCAGCCGACA TCCCACCATTATCAGCCAGGGTAACCGCTTCATCGCCCCACCCGAAAAGGAACTCAAACAGGTGACTAAAAGAGACTACGCGGCGGAATCAGAATGGAGG AACTGGATATGGAGATCGGAGGGCGATGTGTTCATGAATGAGGCATTCTTCATCGAATCAGGGCAACCGAATTTGAAGACGAGGCCATCGAAGAAGTTTA TGATCAAGCCCGAACCAGGATCGCTCGCAACTAAGATGACCAGATTTGCTGGGGCTCTTGAGTGCAAACCTAACCAGAAGTGTTGA
AA sequence Show only first row Show all	>Lus10005254 pacid=23155700 polypeptide=Lus10005254 locus=Lus10005254.g ID=Lus10005254.BGIv1.0 annot-version=v1.0 MGRLMFILFFSFATIIPCLRAQDATKIKPQYDEVWQKRAEQAKRNLMAAYVPNPLDSDDDVSDTPSSNSGSSRKSMSGNEDVGSKEGTMKSKTRRSLKQG KRKYLGPCATTNPMDACWRCKEDWATNRRQMAKCALGFGRKTTGGIDGRLYVVTDNSDDDLLNPVPGTLRYAVIQVEPLWIIFAHDMNIKLNGELLMTGN KTIDGRGANVHIAYGAGITVQFVENVIIHGIRVHHVVPTNGGMIRDSVDHYGLRTQSDGDGISIFGSTNVWIDHVSMSQCTDGLIDAIQGSTAITISNCH FTHHNDAILLGASDSFSGDQFMQITVAYNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSRHPTIISQGNRFIAPPEKELKQVTKRDYAAESEWR NWIWRSEGDVFMNEAFFIESGQPNLKTRPSKKFMIKPEPGSLATKMTRFAGALECKPNQKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01270			Pectate lyase family protein (...		Lus10005254 [exp]	0	1

Compare expression of checked genes

Lus10005254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.