Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15080 697 / 0 Protein kinase superfamily protein (.1) AT3G28690 674 / 0 Protein kinase superfamily protein (.1.2.3) AT3G01300 663 / 0 Protein kinase superfamily protein (.1) AT5G01020 444 / 9e-154 Protein kinase superfamily protein (.1) AT2G28930 444 / 9e-154 APK1B protein kinase 1B (.1.2.3) AT1G07570 444 / 1e-153 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 440 / 2e-152 NAK Protein kinase superfamily protein (.1.2) AT2G02800 427 / 6e-147 Kin2, APK2B protein kinase 2B (.1.2) AT1G69790 415 / 1e-142 Protein kinase superfamily protein (.1) AT2G39660 413 / 7e-142 BIK1 botrytis-induced kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030668 [exp] 970 / 0 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10030796 [exp] 702 / 0 AT5G15080 691 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 502 / 5e-176 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 496 / 1e-173 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10013273 [exp] 506 / 3e-169 AT3G17900 696 / 0.0 unknown protein Lus10024391 [exp] 462 / 7e-161 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 460 / 4e-160 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 458 / 7e-160 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 455 / 5e-158 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G077300 [exp] 785 / 0 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 779 / 0 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 719 / 0 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 715 / 0 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 679 / 0 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 506 / 6e-178 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 501 / 6e-176 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 469 / 1e-163 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 469 / 2e-163 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 457 / 5e-159 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10005255 pacid=23155706 polypeptide=Lus10005255 locus=Lus10005255.g ID=Lus10005255.BGIv1.0 annot-version=v1.0 ATGGGTTTGGGTTCTGATTCTTCCAAACCCAAGCAGCAGCAGTTTGAGGTGAAATCGACCAGGAAGCAGCAGAATCAGAAGAAGAAGAAGGTGAAAGATG TGGGTAGAAGTGGTAAAGAAGATGAAAGTGATGATATTGGTTGCTGGTTTAGATTGAGACTGATCGGTGGATGCATGCCTTCAAGATCAAAAGTCGATAG CTCCCTGAGTGGCATCACTAATCAATATGCGAAGAGTGAATCAGCAGATGAGAAGAGAAACGAGCAACCAGTTGTAGTCCCAATAGTGTCCTCTACAACT ACGAGTAATGCAGAAAGCACACCCTCGACTCCGAAATTTAGCGAGGAACTAAGGCTGGCTTCTCAGCTAAGGAAGTTCACCTTTAATGACCTTAAACTAG CGACTAGGAACTTCAGGCCCGAAAGTCTCCTCGGGGAAGGCGGGTTTGGATGTGTATTCAAAGGGTGGATTGAAGAGAACGGGACGGCTCCTGTGAAACC GGGGACTGGACTTACCGTTGCTGTGAAAACCCTGAACCACGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCTGAAGTGAATTTTCTTGGGAATCTTCTC CATCCGAACTTGGTTAAGTTGATTGGTTACTGCATTGAAGACGATCAAATGCTGCTGGTTTACGAGTTCATGCCTCGTGGAAGCTTGGAGAACCACCTCT TCAGGAGGTCCTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCAAGAGGTCTTGCCTTCCTTCATGAAGAAGCTGAAAGACCAGT CATATATCGTGATTTCAAAACATCGAATATCTTACTTGATGCGGATTACAATGCCAAACTCTCGGACTTCGGCCTTGCTAAGGATGGTCCAGAGGGAGAT AAAACTCATGTTTCCACTCGAGTTATGGGGACGTATGGCTATGCTGCCCCAGAATATGTGATGACTGGACACTTGACGTCGAAGAGTGATGTGTACAGCT TCGGAGTCGTTCTACTAGAAATGTTAACAGGACGGAGATCGATGGACAAAAACCGGCCAAATGGAGAGCACAACCTCGTGGAATGGGCAAGGCCACATTT CGCCGACAGGAAAAGGTTCTACAGGCTACTGGACCCTCGTCTCGAAGGCCATTTCTCAATCAAAGGCGCTCAAAAGGCCATTCAGCTAGCCGGACTGTGT CTAAGCCGTGATCCAAAGGCCAGACCTCGGATGAGTGAAGTTGTGGACACATTAAAGCCTTTGCCGAGCTTAAAAGACATGGCCAGCTCTTCTTATTACT TCCAGACGATGCAAGCAGAGCGTAATAAGTCGAATGTGAATGCGAATGCGAAGAATGGTGGAGTTAGAGCCCAGGGGGGAGGTTTCATGACGAGGAATGG ACAGCCTTTGAGGAGCTTATCGAGTCTAAGTGGTACTCGTGCTTCTCCACATAACCAGCCTTCCCAGTCACCAAAACCTAATGGGAAGAAGTCATAG
AA sequence Show only first row Show all	>Lus10005255 pacid=23155706 polypeptide=Lus10005255 locus=Lus10005255.g ID=Lus10005255.BGIv1.0 annot-version=v1.0 MGLGSDSSKPKQQQFEVKSTRKQQNQKKKKVKDVGRSGKEDESDDIGCWFRLRLIGGCMPSRSKVDSSLSGITNQYAKSESADEKRNEQPVVVPIVSSTT TSNAESTPSTPKFSEELRLASQLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGNLL HPNLVKLIGYCIEDDQMLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAARGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGD KTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHFADRKRFYRLLDPRLEGHFSIKGAQKAIQLAGLC LSRDPKARPRMSEVVDTLKPLPSLKDMASSSYYFQTMQAERNKSNVNANAKNGGVRAQGGGFMTRNGQPLRSLSSLSGTRASPHNQPSQSPKPNGKKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15080			Protein kinase superfamily pro...		Lus10005255 [exp]	0	1
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	1.7	0.9147
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10005419 [exp]	4.2	0.8689
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	7.5	0.8918
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	8.6	0.8571
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	11.6	0.8841
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	11.7	0.8701
AT4G32250			Protein kinase superfamily pro...		Lus10001499 [exp]	15.5	0.8687
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	15.5	0.8935
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	15.7	0.8910
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	16.1	0.8909

Compare expression of checked genes

Lus10005255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.