Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40935 228 / 5e-77 PLAC8 family protein (.1.2.3) AT1G49030 85 / 3e-20 PLAC8 family protein (.1) AT3G18460 82 / 1e-19 PLAC8 family protein (.1) AT3G18470 76 / 9e-18 PLAC8 family protein (.1) AT2G45010 74 / 1e-16 PLAC8 family protein (.1.2) AT1G68630 72 / 7e-16 PLAC8 family protein (.1) AT5G51400 72 / 2e-15 PLAC8 family protein (.1) AT5G35525 70 / 3e-15 PLAC8 family protein (.1) AT1G14870 70 / 3e-15 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT2G37110 70 / 1e-14 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004063 [exp] 81 / 1e-19 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10031733 [exp] 80 / 2e-18 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10027214 [exp] 79 / 8e-18 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10038926 [exp] 79 / 1e-17 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10028184 [exp] 78 / 1e-17 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10034298 [exp] 77 / 1e-17 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10008890 [exp] 72 / 3e-16 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10021696 [exp] 73 / 5e-16 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10042885 [exp] 73 / 8e-16 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024900 [exp] 294 / 8e-103 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G109100 [exp] 99 / 7e-26 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 96 / 7e-25 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 95 / 2e-24 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 95 / 2e-24 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G092200 [exp] 94 / 4e-24 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 94 / 5e-24 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 87 / 3e-21 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 82 / 1e-19 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1) Potri.010G108800 [exp] 82 / 1e-19 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10005257 pacid=23155721 polypeptide=Lus10005257 locus=Lus10005257.g ID=Lus10005257.BGIv1.0 annot-version=v1.0 ATGAACGGCGAAAGTGGTTATGTACCACCCGCTTATGTTCCACTGGGACAATCAGACATTGAATCAGAGTTTGTTCAGCCCAAGGAAGACCGATATGCTC CTTGTCACGTCGTGGGTGATGGACCGGCGCGTTGGTCATCTGGAATCTGTGCCTGCTGTGATGATATGCCGAGCTGTTTGATAGGTTGTTTATGTCCTTG CTACTTGTTTGGGAAGAACGCAGAATTTTTGGGTTCTGGAACACTAATCGGATCATGCGTAACTCACTTCATTCTGTGGTCTGTTGTAAACACAGTCTGT TGCTGCATAAGTGATGGCATCTTGTTGGGAATACCTGGATGTTTCATTGCTTGCTATGCTTGTTCTTACCGTAAGGGCCTGCGTGAGAAGTACAAATTGG AGGAGGCGCCTTGCAATGACTTTGTTACCCACTTCTTCTGCCATTTATGTGCCAACTGTCAAGAGTATAGGGAGATAAGAGAGAGGTGTAGCAACTCTAA CCCGCATGATCTGAGTGAAGCAGCTGCAGTCTCCGCTCCACCAGCACAGGTAATGGAAGCAGACTCGACACAGTAA
AA sequence Show only first row Show all	>Lus10005257 pacid=23155721 polypeptide=Lus10005257 locus=Lus10005257.g ID=Lus10005257.BGIv1.0 annot-version=v1.0 MNGESGYVPPAYVPLGQSDIESEFVQPKEDRYAPCHVVGDGPARWSSGICACCDDMPSCLIGCLCPCYLFGKNAEFLGSGTLIGSCVTHFILWSVVNTVC CCISDGILLGIPGCFIACYACSYRKGLREKYKLEEAPCNDFVTHFFCHLCANCQEYREIRERCSNSNPHDLSEAAAVSAPPAQVMEADSTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40935			PLAC8 family protein (.1.2.3)		Lus10005257 [exp]	0	1
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	4.0	0.8101
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10020106 [exp]	13.4	0.7271
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	18.7	0.7655
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10019769 [exp]	19.8	0.7699
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	22.2	0.7691
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	29.5	0.7423
AT3G10330			Cyclin-like family protein (.1...		Lus10031055 [exp]	31.1	0.7149
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	33.2	0.7492
AT3G58800			unknown protein		Lus10007354 [exp]	33.4	0.7430
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	37.8	0.7559

Compare expression of checked genes

Lus10005257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.