Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14520 637 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 629 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 446 / 3e-154 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 408 / 1e-139 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 367 / 1e-123 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 366 / 3e-123 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 358 / 4e-120 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G55930 72 / 3e-13 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 67 / 1e-11 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012476 [exp] 582 / 0 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 537 / 0 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10020494 [exp] 524 / 0 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 448 / 4e-155 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 442 / 3e-153 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 441 / 2e-152 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 391 / 9e-133 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 389 / 4e-132 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10028010 [exp] 375 / 1e-126 AT1G03270 635 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288000 [exp] 676 / 0 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 651 / 0 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 560 / 0 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 448 / 4e-154 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 438 / 6e-151 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G202100 [exp] 398 / 2e-135 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 394 / 5e-134 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.001G362100 [exp] 67 / 1e-11 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.002G260401 [exp] 57 / 1e-10 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10005259 pacid=23155702 polypeptide=Lus10005259 locus=Lus10005259.g ID=Lus10005259.BGIv1.0 annot-version=v1.0 ATGGCGGTGGAGTACAGCTGCTGCGGCTCTGATTTCTTCATCCACATTGCGGTGATCACGCTGCTGGTGCTGTTCGCCGGGATGATGTCCGGACTAACTT TGGGTCTCATGTCTATGAGCCTCGTCGATCTCGAAGTCCTCGCCAAATCCGGCACTCCTCAGGATCGGAAACACGCTAAAAAGATACTGCCAGTTGTCAA AAATCAACATTTGTTACTCTGTACACTGCTGATTTGCAATGCTGCTGCTATGGAGGCACTCCCTATTTTCCTTGACAGCCTGATAACAGCATGGGGTGCT ATCCTGATTTCTGTTACTCTAATTCTGCTGTTTGGTGAGATAATACCACAATCTATTTGCACCAGATATGGTCTGGCAATTGGTGCCACGATGTCCCCCG TTGTTCGAGTGCTGGTTTGGATATGCTTTCCAGTTGCCTATCCGATTAGCAAGCTTCTAGATTATCTGCTGGGTCATGGGCATGTCGCTCTTTTCCGCAG AGCTGAGTTGAAGACCCTTGTGAATTTTCACGGTAACGAGGCAGGAAAAGGTGGAGAGCTGACTCATGATGAAACAACGATCATAGCCGGAGCACTTGAG CTCACTGAAAAAACAGCCAGTGATGCTATGACTCCCATCTCCGAAACTTTTGCCATTGATATCAATGGCAAGCTTGACAGTGATCTGATGAATTTGATTC TGGAGAATGGACACAGCAGAGTGCCCGTGTATTATGAGCAACCTACCAACATTATCGGCCTTGTTTTGGTGAAGAATCTTTTAACCATCCACCCTGAAGA TGCCACGCCTGTAAAGAACGTGACCATTCGAAGAATCCCCAGGGTTCAAGAACATCTACCGCTATATGACATACTGAATGAGTTTCAGAAAGGACACAGC CACATGGCCGTAGTGGTAAGGAAGTGCAAGAAAGCAGAACAGGAACAACTCCCCGCGATGGACAGTTCAGCCGATGCTCGAGTTAAAGAAGTGAGAGTTG ATATAGACGGGGAGAAGAAGCCATCGAAAAGCAACAAGTCGTTCCAGAAGTGGCAGAGCTTCCCCAACAGGGCCACCTCGTTCAAAGGATCGAGGAGCAG GAAATGGAACAAGGATGTGGACTCTGACATTTTACAAATAGATGCTGGCAACCCGCTCCCGACTCTCCCTGAAGAAGAAGAGGCCACCGGAATCATAACA ATGGAGGATGTGATTGAAGAACTTCTGCAGGAGGAGATTTACGACGAAACAGATCACCACCATGAGTAG
AA sequence Show only first row Show all	>Lus10005259 pacid=23155702 polypeptide=Lus10005259 locus=Lus10005259.g ID=Lus10005259.BGIv1.0 annot-version=v1.0 MAVEYSCCGSDFFIHIAVITLLVLFAGMMSGLTLGLMSMSLVDLEVLAKSGTPQDRKHAKKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLITAWGA ILISVTLILLFGEIIPQSICTRYGLAIGATMSPVVRVLVWICFPVAYPISKLLDYLLGHGHVALFRRAELKTLVNFHGNEAGKGGELTHDETTIIAGALE LTEKTASDAMTPISETFAIDINGKLDSDLMNLILENGHSRVPVYYEQPTNIIGLVLVKNLLTIHPEDATPVKNVTIRRIPRVQEHLPLYDILNEFQKGHS HMAVVVRKCKKAEQEQLPAMDSSADARVKEVRVDIDGEKKPSKSNKSFQKWQSFPNRATSFKGSRSRKWNKDVDSDILQIDAGNPLPTLPEEEEATGIIT MEDVIEELLQEEIYDETDHHHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	2.4	0.8657
AT3G09180			unknown protein		Lus10016953 [exp]	4.9	0.8179
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	7.5	0.8266
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	7.7	0.8625
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10007664 [exp]	8.1	0.8213
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10024413 [exp]	8.3	0.7885
AT3G17900			unknown protein		Lus10013273 [exp]	10.8	0.8121
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	11.6	0.8256
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	12.4	0.8060
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10024978 [exp]	13.0	0.8062

Compare expression of checked genes

Lus10005259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.