Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53490 414 / 1e-146 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104500 [exp] 455 / 1e-162 AT1G53490 503 / 0.0 RING/U-box superfamily protein (.1) Potri.001G383900 [exp] 437 / 1e-155 AT1G53490 480 / 2e-172 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10005260 pacid=23155694 polypeptide=Lus10005260 locus=Lus10005260.g ID=Lus10005260.BGIv1.0 annot-version=v1.0 ATGAGATGCAATGCATGCTGGCGAGAATTGGACGGGCGTGCTGTCGCGACTACTTGTGGTCACATCCTCTGCACCGAAGATGCCAGCAAAGTACTTAGCA ATGATGCGGCATGCCCAGTCTGTGAACAAGTGCTGTCTAAGAGCCATATGAAACCTGTGGACGTAAATCCAAACGATGAATGGACAAACATGGCAATGGC TGGAATATCTCCACAGACTTTGATGAAGACTACATACAAAGGTTTCATGTTTTATATTGGGCAGAAGGAACTAGAGATGCAGTTCAAAATGAACAGAATC GTTGCGCAATGCCGCCAGAAATGTGAGGCCTTGCAGGAAAAGTGTACAGAGAAATTAGAGCAACTCCATAATGCATATCAGAAGATGGGTAAGAGGTGCC AGATGATGGAGCAGGAAATTGAGTCTCTCCGAAAGGACAAGCAAGAGCTGCAAGAGAAGTATTCTGAACAATCAAGGCAAAAGAGAAACCTTGACGAAAT GTACGATCAACTGAGAAGTGAACTTGAGTCCATGAAAAGATCAGCCATCCAACCAGCTAGCAACTTCTATGGAAGAAGAAATAATGATGTTGATTTGTTT GCGGATCATGGAGCTACCATGATGGATACCAGGGAGCCAAATCGAAATGATTGGTCGGCTGTTACTCCTACTACTCCAGGACTTAAGGAGGACATATGGA CTACAAGACAGAATTCTGCAACTTCTGGTTTTGGCATCTCAGGTGGCAACTCTCCGGTCAACAGACAAGCTCAAGCTGACCTTGGAAACATAAGGGCAGG CGGCAACCCTGCTTTCGGGGCTGCACCTCGCAACCCAGCTATGGCATTGAGGAACCTGATCTTTTCGCCGATCAAACGACCCCAAACTCGTAACCGCAAC AACTTGTTCTCGTAA
AA sequence Show only first row Show all	>Lus10005260 pacid=23155694 polypeptide=Lus10005260 locus=Lus10005260.g ID=Lus10005260.BGIv1.0 annot-version=v1.0 MRCNACWRELDGRAVATTCGHILCTEDASKVLSNDAACPVCEQVLSKSHMKPVDVNPNDEWTNMAMAGISPQTLMKTTYKGFMFYIGQKELEMQFKMNRI VAQCRQKCEALQEKCTEKLEQLHNAYQKMGKRCQMMEQEIESLRKDKQELQEKYSEQSRQKRNLDEMYDQLRSELESMKRSAIQPASNFYGRRNNDVDLF ADHGATMMDTREPNRNDWSAVTPTTPGLKEDIWTTRQNSATSGFGISGGNSPVNRQAQADLGNIRAGGNPAFGAAPRNPAMALRNLIFSPIKRPQTRNRN NLFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53490			RING/U-box superfamily protein...		Lus10005260 [exp]	0	1
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10022212 [exp]	7.7	0.6905
AT5G57710			Double Clp-N motif-containing ...		Lus10008902 [exp]	8.5	0.6571
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10037255 [exp]	16.3	0.6903
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10037635 [exp]	21.5	0.6752
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	30.4	0.6762
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	48.3	0.6429
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	53.2	0.6378
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037631 [exp]	55.6	0.5404
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10021204 [exp]	56.8	0.5780
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	72.2	0.5977

Compare expression of checked genes

Lus10005260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.