Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62310 1301 / 0 RNA helicase family protein (.1) AT2G47250 1274 / 0 RNA helicase family protein (.1) AT1G32490 682 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT3G26560 674 / 0 ATP-dependent RNA helicase, putative (.1) AT2G35340 668 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 582 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT4G18465 565 / 0 RNA helicase family protein (.1) AT1G26370 519 / 8e-175 RID1 RNA helicase family protein (.1) AT1G27900 502 / 1e-168 RNA helicase family protein (.1) AT4G16680 490 / 2e-164 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036783 [exp] 669 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 663 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037145 [exp] 607 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10033690 [exp] 594 / 0 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037067 [exp] 492 / 2e-164 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 486 / 3e-162 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 477 / 8e-159 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 404 / 8e-131 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 355 / 2e-114 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117900 [exp] 1327 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 1306 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.015G024400 [exp] 680 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 671 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.012G034200 [exp] 671 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 591 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.004G052700 [exp] 556 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 527 / 8e-178 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 481 / 2e-160 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.010G117800 [exp] 323 / 1e-95 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10005261 pacid=23155714 polypeptide=Lus10005261 locus=Lus10005261.g ID=Lus10005261.BGIv1.0 annot-version=v1.0 ATGGGCACGGAGAGGAAGAGAAAAGTGAGCCTTTTCGACGTGGTCGACGACCCATCTGCTAAACTCACCAGGGCGAACGGTGCCCTCAATGGAATCAACA GCTCTGTTAATGGGTGGAACGGGAAACCGTATTCCCAGAGGTACTATGATATATTGGAAAAGAGGAGGACTTTGCCCGTTTGGCACCAAAAGGAGGAGTT TTTAGACGTCTTGAGGAAAAATCAGGTTCTCGTCCTTGTTGGCGAGACCGGAAGTGGCAAAACTACTCAGATTCCGCAATTCGTCTTAGAAGCCGTTGAG TTGGAAACTCCGGACAAGAGGCGCAAAATGATGGTAGGGTGCACTCAGCCTCGTAGGGTGGCTGCAATGTCTGTTTCTCAGCGTGTTGCTGAAGAGATGG ATGTTGCTATCGGCGAAGAAGTTGGTTACAGCATCCGTTTCGAAGATCGTAGCAGTGCCAGAACAGTGTTGAAGTACTTAACGGATGGTATGCTTTTAAG AGAAGCAATGACCGATCCACTTTTGGAACGATACAAGGTGATAATCCTCGATGAAGCTCACGAGAGAACTTTGGCAACAGATGTGCTTTTTGGGCTTCTT AAAGAAGTTTTGAGGAATAGACCGGACTTGAAGCTAGTTGTGATGAGTGCAACACTAGAGGCTGAAAAGTTTCAGGGGTATTTCAATGGCGCGCCTCTTA TGAAAGTTCCTGGTAGGCTTCATCCTGTGGAGATTTTCTACACCCAGGAGCCCGAAAGGGATTACCTGGAGGCTGCGATTCGTACTGTCGTTCAGATACA CATGAGTGAAGGCCCTGGCGATATACTAGTTTTCTTGACTGGAGAGGAAGAGATAGAGGATGCTTGTCGCAAAATTGCGAAAGAAATTGGGAATCTGGGA GACACGGTAGGGCCGGTGAAAACGGTACCTCTGTATTCGACTCTTCCACCAGCTATGCAGCAGAAGATATTCGAGTCCGCTCCACCTCCTTTGAAAGAGG GTGGTCCCTGTGGTAGGAAAATCGTGGTATCAACAAACATTGCAGAAACATCACTTACAATTGATGGCATTGTATATGTTATCGATCCCGGTTTCTCGAA GCAAAAAGTTTACAATCCACGTGTTCGTGTTGAGTCCTTGCTGGTCTCCCCGATCTCAAAGGCTAGTGCACACCAAAGAGCTGGTCGTGCTGGTCGAACA GCGCCTGGAAAATGTTTTAGGCTCTATACGGAAAGAAGTTTCAATCAGGACCTGCAGCCACAAACGTTTCCTGAGATATTGCGGTCAAATCTTGCAAACA CTGTTCTTACACTGAAGAAGCTAGGGATTGATGACTTGGTACATTTTGATTTCATGGACCCCCCTGCTCCCGAGACGTTGATGCGAGCTTTAGAAGTATT GAACTATTTGGGAGCTTTGGATGATGAAGGTAACTTGACAAAGCTAGGGGAGATTATGAGCGAGTTCCCGTTAGATCCTCAGCTGTCGAAGATGCTGGTT ATCAGTCCCGAGTTCAATTGTTCAAATGAGATCCTCTCAGTTTCAGCTATGCTCTCAGGTTGTGGTGAGACTGTCTTGTACTGGTACCGTAGAAATCTAA GCAAATGCAAATGGTGTCTTCTCGCCTCTATGAATCCTGCTGACCATACCATCGGCATATTCCGTGGTAACCAAATTCTGTCTTTAGTACCGAATTGCTT TGTCCGCCCTAGGGAGGCCCAAAAGGCAGCCGATGAAGCCAAAGCCCGGTTTGCACACATCGATGGCGATCACCTCACACTGTTGAATGTGTACCATGCA TTCAAGCAAAATGACGAGGATCCTTCATGGTGCTATGAGAATTTCATCAATTTCCGAGCACTGAAGTCTGCTGATAATGTGAGACAACAGCTTGTCCGCA TCATGTCGAGGTTTAGCCTGAAGATGTGCAGCACTCCATTCGAGAGCAGGGATTATTACGTTAACATTCGGAAGGCCATACTAGCAGGCTACTTTATGCA GGTTGCTCATCTCGAACGTACCGGACATTATTTGACTGTCAAAGATAACCAAGTCGTGCACTTGCATCCATCTAATTGTCTGGATCACAAGCCCGAGTGG GTTGTATACAACGAATACGTTTTGACCACTAGGAATTTCATCCGTACAGTGATAGATATCCGCGGTGAATGGCTTGTGGACATAGCATCTCACTATTATG ATCTGGAGAACTTCCCGCAGTGCGAAGCCAAGCGAGTTCTTGAAAAGCTGTACAAGAACCGCAAAAGTAAGAAGTAA
AA sequence Show only first row Show all	>Lus10005261 pacid=23155714 polypeptide=Lus10005261 locus=Lus10005261.g ID=Lus10005261.BGIv1.0 annot-version=v1.0 MGTERKRKVSLFDVVDDPSAKLTRANGALNGINSSVNGWNGKPYSQRYYDILEKRRTLPVWHQKEEFLDVLRKNQVLVLVGETGSGKTTQIPQFVLEAVE LETPDKRRKMMVGCTQPRRVAAMSVSQRVAEEMDVAIGEEVGYSIRFEDRSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLL KEVLRNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMSEGPGDILVFLTGEEEIEDACRKIAKEIGNLG DTVGPVKTVPLYSTLPPAMQQKIFESAPPPLKEGGPCGRKIVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRT APGKCFRLYTERSFNQDLQPQTFPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQLSKMLV ISPEFNCSNEILSVSAMLSGCGETVLYWYRRNLSKCKWCLLASMNPADHTIGIFRGNQILSLVPNCFVRPREAQKAADEAKARFAHIDGDHLTLLNVYHA FKQNDEDPSWCYENFINFRALKSADNVRQQLVRIMSRFSLKMCSTPFESRDYYVNIRKAILAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW VVYNEYVLTTRNFIRTVIDIRGEWLVDIASHYYDLENFPQCEAKRVLEKLYKNRKSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62310			RNA helicase family protein (....		Lus10005261 [exp]	0	1
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	1.4	0.9377
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	2.8	0.9102
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	9.2	0.8724
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	15.0	0.8982
AT3G13460		ECT2	evolutionarily conserved C-ter...		Lus10002624 [exp]	16.3	0.9052
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	16.5	0.8873
AT1G07970			unknown protein		Lus10038462 [exp]	16.6	0.9019
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10028534 [exp]	16.9	0.8895
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	17.7	0.8234
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	18.0	0.8979

Compare expression of checked genes

Lus10005261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.