Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15070 1354 / 0 Phosphoglycerate mutase-like family protein (.1.2) AT3G01310 1333 / 0 Phosphoglycerate mutase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015343 [exp] 1385 / 0 AT3G01310 1726 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10032191 [exp] 1372 / 0 AT5G15070 1465 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10008307 [exp] 1342 / 0 AT5G15070 1662 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129900 [exp] 1462 / 0 AT5G15070 1761 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Potri.017G076400 [exp] 1437 / 0 AT5G15070 1745 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00328 [flax] [poplar] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Lus10005263 pacid=23155708 polypeptide=Lus10005263 locus=Lus10005263.g ID=Lus10005263.BGIv1.0 annot-version=v1.0 ATGATATATTATCCAAGTTCCGCTGGTGGAGGCATGAAGGAATTATTCAGAAAGGTTGGAAACCGCTCCAGTGAGTTCCATCCAGAGACAAGAAGAGTAA GGCGTGAAGGATCTTACATATATGAAGAATTCATGCCAACTGGTGGAACAGATGTCAAGGTTTATACAGTGGGCCCTGAATATGCACATGCTGAGGCAAG GAAGTCTCCAGTTGTTGATGGTGTTGTCATGAGAAACCCAGACGGCAAGGAGGTGAGATATCCGGTATTGTTGACACCTAATGAGAAGCAAATATCTCGA GACGTTTGTCATGCTTTTAGGCAAGCGGTGTGTGGATTTGATCTTCTGCGTTGTGAAGGACGCTCATATGTTTGTGATGTTAATGGGTGGAGTTTTGTGA AGAATTCTTACAAGTACTATGATGATGCTGCTTGTGTTTTGAGGAAGCTTTTTCTAGATGCTAAAGCCCCTCATTTATCAACGGCAATTCCACCTACCTT ACCATGGAAAGTAAATGAACCAGCTCAACCTACTGAAGGACTTACTCGGCAAGGAAGTGGAATTATTGGCTCATTTGAGCAGTCTGAGGAGCTACGCTGT GTCATTGCTATTGTCCGGCACGGTGACAGAACTCCCAAGCAAAAGGTGAAGTTGAAGGTCACTGAGGAAAATCTGTTGAATTTGATGTTAAAGTATAATG GGGGAAGACCAAGAGCTGAGACAAAACTGAAAAGTGCTATTCAGTTACAAGACTTGTTGGATGCCACACGGATGCTGGTTCCTCGTAGTCGAGAAAGCGA CAATGAGGCAGAAGATGTCGAGCATGCTGAAAAACTACGCCAAGTTAAAGCAGTGCTTGAGGAGAAAGGGCATTTCTCTGGTATTTACAGGAAAGTCCAA TTGAAGCCTCTGAAGTGGATCAAAGTTCCAAAGAGTAATGGTGAAGGAGAGGAGGATCGACCAGTTGAAGCCTTGATGGTTCTCAAGTATGGGGGTGTGC TTACCCATGCTGGCAGAAAGCAGGCAGAAGAATTGGGTAGATATTTCCGAAATAACATGTATCCGGGGGAAGGTACAGGGCTCCTCCGTCTACACAGTAC ATATCGTCATGATCTTAAGATTTACAGCTCTGATGAGGGTCGTGTACAGATGTCTGCTGCCGCTTTTGCAAAAGGGCTTCTTGATTTGGAAGGCCAGCTA ACTCCAATTCTGGTTTCCCTGGTTAGCAAGGATTCCTCCATGTTGGATGGACTTGATCATGCTAGCATTGAGATGGAAGAAGCTAAGGCTAGGCTGAATG AGATAATCACTTCAAGTGTAAGGACTACTACTAGCAATGTATCATCGGACTGTCCGTGGATGATAGATGGAGCTGGACTTCCCTCAAATGCATCTGAACT TCTCCAAAATCTGGAAAAACTGACTAAGAAAGTCACCGAACAAGTCAGATTGCTAGCTAAAGATGAAGATGAAGAACTTACTGAGACAAGCACACACGAT GTTGTTCTCCCATATGACCAAGCAAAGGCCCTTGGTAAAACAAACATTGATGTTGATCGAATTGCTGCTGGTTTACCCTGTGGTAGTGAAGGATTCTTGT TGATGTATGCACGCTGGAGGAAACTTGAGAAGGATTTGTTTAATGAGCGCAAAGAGAGGTTCGACATTACTCAAATTCCTGATGTTTATGACTCCTGCAA ATATGATCTCTTGCACAATGCTCATCTTAATCTAGAAGGACTGGATGAACTCTTTAAAGTTGCTCAGTTGCTTGCAGATGGAGTGATCCCAAATGAGTAT GGAATCAATCCAAAGCAGAAACTGAAGATTGGTTCAAAGATTGCACGTCGATTACTGGGGAAGATCTTGATTGACCTGAGGAATACTCGCGAGGAAGCCA TTAATGTGGCTGAACTAAAGAGTAGTCAAGACCAAGAGTCGAATTCTACAGAGACTGAAAAGGCGAATACGGATTATCAACCAAAGCTTCATAACAGAAG TGAAGACACTAGACGAACTAGCACGGCAAGTGAAATTTCAATTGACCAGGATGACGATGACGACACACAATACCGTTTGGATCCAAAGTACGCAAATGTG AAAACACCCGAACGCCATGTCAGAACAAGGCTATACTTCACTTCTCAGGTTGAGTTAGAAGACCCAAAGAGGTTCCGTATAGAAATGACATTTAGCCGCG GTGCAGATTTATCGCCATTGGAAGTTGGAAATGACGTGGAGGCGACCTCCTTACATCGGGAGCATACACTGCCGATAATGGGACCGGAACGGCTGCAGGA GGTGGGATCGTACCTGACATTGGAGAAGATGGAGAAGTTGGTTCGTCCGTTTGCAATGCCGGCAGAAGATTTCCCGCCGCCGGCTACTCCAGCTGGTTTC TCAGGCTACTTCTCCAAAAGCGCCGCTGTGCTGGAGCGCCTGGTTAATCTCTGGCGGTCCAACAACAAAGAGAAACACGGCGCTTCTAACGGCAAGTAA
AA sequence Show only first row Show all	>Lus10005263 pacid=23155708 polypeptide=Lus10005263 locus=Lus10005263.g ID=Lus10005263.BGIv1.0 annot-version=v1.0 MIYYPSSAGGGMKELFRKVGNRSSEFHPETRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQISR DVCHAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKLFLDAKAPHLSTAIPPTLPWKVNEPAQPTEGLTRQGSGIIGSFEQSEELRC VIAIVRHGDRTPKQKVKLKVTEENLLNLMLKYNGGRPRAETKLKSAIQLQDLLDATRMLVPRSRESDNEAEDVEHAEKLRQVKAVLEEKGHFSGIYRKVQ LKPLKWIKVPKSNGEGEEDRPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQL TPILVSLVSKDSSMLDGLDHASIEMEEAKARLNEIITSSVRTTTSNVSSDCPWMIDGAGLPSNASELLQNLEKLTKKVTEQVRLLAKDEDEELTETSTHD VVLPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLEKDLFNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEY GINPKQKLKIGSKIARRLLGKILIDLRNTREEAINVAELKSSQDQESNSTETEKANTDYQPKLHNRSEDTRRTSTASEISIDQDDDDDTQYRLDPKYANV KTPERHVRTRLYFTSQVELEDPKRFRIEMTFSRGADLSPLEVGNDVEATSLHREHTLPIMGPERLQEVGSYLTLEKMEKLVRPFAMPAEDFPPPATPAGF SGYFSKSAAVLERLVNLWRSNNKEKHGASNGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	0	1
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	2.6	0.8866
AT4G25030			unknown protein		Lus10034730 [exp]	2.8	0.8516
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	3.7	0.8554
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	4.5	0.8469
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10007943 [exp]	5.4	0.7857
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	6.5	0.8458
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	8.3	0.8548
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	9.6	0.7837
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10023346 [exp]	10.4	0.7727
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	11.0	0.8204

Compare expression of checked genes

Lus10005263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.