Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33860 552 / 0 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G60450 419 / 2e-136 ARF ARF4 auxin response factor 4 (.1) AT5G62000 362 / 9e-114 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 342 / 3e-108 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT3G61830 336 / 7e-107 ARF ARF18 auxin response factor 18 (.1) AT2G46530 334 / 5e-106 ARF ARF11 auxin response factor 11 (.1.2.3) AT5G37020 332 / 3e-103 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT4G23980 328 / 4e-103 ARF ARF9 auxin response factor 9 (.1.2) AT1G30330 333 / 2e-102 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 332 / 6e-101 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013942 [exp] 1112 / 0 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10043200 [exp] 362 / 7e-114 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 362 / 9e-114 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 355 / 6e-113 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 350 / 4e-111 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 349 / 6e-111 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10007386 [exp] 335 / 6e-104 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 334 / 6e-104 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 334 / 7e-104 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050150 [exp] 662 / 0 AT2G33860 562 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.011G059300 [exp] 639 / 0 AT2G33860 566 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.009G011800 [exp] 446 / 2e-147 AT5G60450 830 / 0.0 auxin response factor 4 (.1) Potri.015G105300 [exp] 372 / 1e-117 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 368 / 4e-116 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 364 / 2e-115 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 360 / 1e-113 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G228800 [exp] 352 / 5e-112 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G142100 [exp] 348 / 3e-110 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.003G001000 [exp] 347 / 4e-110 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10005264 pacid=23175331 polypeptide=Lus10005264 locus=Lus10005264.g ID=Lus10005264.BGIv1.0 annot-version=v1.0 ATGGTGGGTATGATAGATCTTAACACGACGGAGGAGGACGAGGAAACGACGCCGTCTTCCGGTTCTCTACTGTCCTCTTCTTCCTCAGCTTCGAATGCTG CTGCAGCTGCTTCTTCTTCAGTTCCTTCCTCTGTTTGTTTGGAGCTCTGGCACGCCTGTGCTGGCCCGCTTATTTCACTGCCCAAAAAGGGGAGTTTGGT CGCTTATCTGCCTCAGGGACACCTGGACCAGCTCCCCGATTCTTCGCCGGCGGCGGCGCGGGTGAATCTGCCTCCTCACCTCTTCTGTCGGGTGGTCGAT GTCAAGCTCCATGCTGAAGCTGCAACAGATGAAGTTTATGCACAAGTCTCACTTGTTCCTGAGAACGAGCAAACTGAGCTGCAGTTGAGGAGGAGAGGGA GGAATGAAGGTGAAGGAGATGAAGAAGATGGTGAAGAACTTGCTGTGAAGGCTTCAACTCCTCACATGTTCTGCAAAACCCTAACTGCTTCAGATACCAG CACTCATGGCGGGTTCTCGGTCCCTCGCCGAGCTGCTGAGGACTGCTTCCCTCCATTGGACTATACTCAGCAAAGGCCTTCCCAGGAGCTGGTGGCGAAG GATCTCCATGGTTACGAGTGGAGGTTCCGCCATATCTATCGCGGGCAACCAAGGAGGCATTTGCTTACGACTGGGTGGAGCGCGTTTGTTAACAAGAAGA AGCTGGTCTCTGGTGATGCTGTTCTGTTTCTAAGGGGTGAGGATGGTGAGCTGAGACTCGGGGTTCGGAGAGCTGCACAAGTGAAACCATCTGCTACTTT GCCTGTGCTTTTTAGTCAGCTTTCGAGCCACTGCAGTATCGCTGATGTTGCCAATGCTGTCGCTATGAGGAGCGTTTTCAGCGTTTGCTACAACCCGAGA GATAGCTCATCTGAGTTTGTGATTCCTGCAAACAAGTTCATGAAGAGTCTGGACTACTCATTCTGTGCTGGAATGAGATTCAAGATGCGGTTCGAGACTG AAGATTCCTCTGAAAGAAGGTGTTCCGGAATGATAACCGGGATCAGTGACCTCGACCCGGTCAGATGGCCACGTTCCAAATGGAGGTGCCTTGTGGTAAG GTGGGATGATATGGAGGTCAACAGGCACAGCAGGGTGTCTCCGTGGGAAATCGAGGCTTCTGGTTCTGTCTCCAGCAACAGCCACAGTTTCCTAGGATCT GGTCTGAAAAGGACTAGGTCTGCAATGCCAGAATTTCCAGTTCCTGATGGAGTTGGTGCACCACCAGACTTTGGGGAATCCTCTTCTAGGTTCCATAAGG TCTTGCAAGGTCAAGAAATTTCGAGCTTCAACACCCTTTTCGAAGCTGCTGATGGTCGTGATCCCATGAGGTGTTTCCGTGGTAATGCACCACCACCGGC GGGACCACCTTCCCGTAAAGGCATAGGCTTTGGCGAATCCGTGGGATTCCATAGGGTCTTGCAAGGTCAAGAAATATTTCCAAGCTCACCGTACGGAAGA GCCCCCCAGAACAGGGCTCAAGATTCCAATGGTTGCCTTGGAATCTTACCGGGACTTTCCATCCCTGGTATGTCCAGAAATGGTTGGTCTACTTCTACCA TGATGCACCAACAGCCATCATCCTCTCCGTCATCGGTTTTAACATTCCAGCCAGGCCGAGTTTATAACAATCCCGATGGTGGGAGACAGGATTACCGGTT TGTTAACAGCACTTCCCAGCCACAAGGTCAGTACTACCCCTCAACTGGTATCATCCCGCAGAGGGGTATGCATCTCGTCGAGCCATCAAACGAGCCTATC GTGCCTTCTTCTTCGTGTAAGACCAGCTGCAGATTGTTTGGTTTCTCGCTGACTGACGATAGGACCATTAGTAAGGAAGACCACCAAAGCAGCAACCAAA TGCTGCCTTCTCCGACCGGGATGATCAATCCTGAAGGTTCCAATGCAGTTGGAAGGAACTGTACTAATGTTGTTATGAAGCTTAAAACAGGCGAGAGTAG TCCGAATGAGGTTGCTAAGTAA
AA sequence Show only first row Show all	>Lus10005264 pacid=23175331 polypeptide=Lus10005264 locus=Lus10005264.g ID=Lus10005264.BGIv1.0 annot-version=v1.0 MVGMIDLNTTEEDEETTPSSGSLLSSSSSASNAAAAASSSVPSSVCLELWHACAGPLISLPKKGSLVAYLPQGHLDQLPDSSPAAARVNLPPHLFCRVVD VKLHAEAATDEVYAQVSLVPENEQTELQLRRRGRNEGEGDEEDGEELAVKASTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQQRPSQELVAK DLHGYEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQVKPSATLPVLFSQLSSHCSIADVANAVAMRSVFSVCYNPR DSSSEFVIPANKFMKSLDYSFCAGMRFKMRFETEDSSERRCSGMITGISDLDPVRWPRSKWRCLVVRWDDMEVNRHSRVSPWEIEASGSVSSNSHSFLGS GLKRTRSAMPEFPVPDGVGAPPDFGESSSRFHKVLQGQEISSFNTLFEAADGRDPMRCFRGNAPPPAGPPSRKGIGFGESVGFHRVLQGQEIFPSSPYGR APQNRAQDSNGCLGILPGLSIPGMSRNGWSTSTMMHQQPSSSPSSVLTFQPGRVYNNPDGGRQDYRFVNSTSQPQGQYYPSTGIIPQRGMHLVEPSNEPI VPSSSCKTSCRLFGFSLTDDRTISKEDHQSSNQMLPSPTGMINPEGSNAVGRNCTNVVMKLKTGESSPNEVAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	0	1
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	1.0	0.9587
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	1.4	0.9335
AT3G11640			unknown protein		Lus10016964 [exp]	1.7	0.9148
AT1G73470			unknown protein		Lus10042285 [exp]	4.6	0.8995
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	7.5	0.9100
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	8.2	0.8578
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	10.8	0.8973
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	11.0	0.8971
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	11.6	0.9087
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042427 [exp]	12.0	0.8866

Compare expression of checked genes

Lus10005264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.