Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46060 167 / 1e-51 Protein of unknown function, DUF599 (.1) AT5G24600 111 / 1e-29 Protein of unknown function, DUF599 (.1.2) AT3G18215 105 / 1e-27 Protein of unknown function, DUF599 (.1) AT5G10580 73 / 3e-15 Protein of unknown function, DUF599 (.1.2) AT4G31330 62 / 1e-11 Protein of unknown function, DUF599 (.1) AT5G24790 49 / 5e-07 Protein of unknown function, DUF599 (.1) AT5G43180 43 / 9e-05 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013943 [exp] 412 / 3e-148 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 114 / 2e-30 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 112 / 8e-30 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 110 / 7e-29 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 107 / 3e-28 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10013944 [exp] 105 / 1e-27 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1) Lus10032916 [exp] 105 / 3e-27 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10000133 [exp] 98 / 1e-24 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10005267 [exp] 98 / 1e-24 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059400 [exp] 197 / 2e-63 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 186 / 5e-59 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 120 / 3e-33 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 117 / 7e-32 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 70 / 3e-14 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 56 / 3e-09 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10005266 pacid=23175308 polypeptide=Lus10005266 locus=Lus10005266.g ID=Lus10005266.BGIv1.0 annot-version=v1.0 ATGGGTTACCATAAGGAAGAGCTGGACTTGCTCCTGGTCCCTCTAGCATTGATCATCATGTTCAGCTACAACCTCTTCATCCTCTACAGATACTTGAACC ACCCTCACACCACCGCAATCGGATTCGAGAACAACGACAAACGAGCTTGGGTCGAGAGAATCATGCAGGGAGGGACAGAGAACACCCAAACGGCTCTACA GGTAATTTCCACGAACAGTTCAGTTGCAACTGTTTTAGCTTCAATCTCCCTAACCTTGAGCTCCCTAATCGGAGCCTGGCTCGGAGGCTCAACTCCAAAC GTCTTCCAGAGCGAGCTGATCTACGGCGACACGAGCCGGTCGACAATCTCAATCAAGTACATCAGCCTCATGCTCAGCTTCCTCCTCGCCTTCTCCTGCT TCGTTTCCTCCGCCAGGCACTTCGTCCACGCGAATTACCTCATCAGCATCCCTAGCAGTGAGGTTCCGGCGAGAAGCGTGGCGGCAACGGTGATCAAGGC CGGCGATTTCTGGTCCCTGGGGTTGAGAGCTCTGTATTTTGCGCTGAATTTGTTGATGTGGTTCTTCGGACCGGTACCCATGTTTCTTTCTTCTGTGATC ACGGTGACGATTCTGTGCGCCGCCGACGGTAACTCGCAGCCGTTGCATCGTCACTCGCCAGTTCCGGCGAAGGCTCAGCCCAAAAGCCCGATTGGGCCTG AGTTGGTATAG
AA sequence Show only first row Show all	>Lus10005266 pacid=23175308 polypeptide=Lus10005266 locus=Lus10005266.g ID=Lus10005266.BGIv1.0 annot-version=v1.0 MGYHKEELDLLLVPLALIIMFSYNLFILYRYLNHPHTTAIGFENNDKRAWVERIMQGGTENTQTALQVISTNSSVATVLASISLTLSSLIGAWLGGSTPN VFQSELIYGDTSRSTISIKYISLMLSFLLAFSCFVSSARHFVHANYLISIPSSEVPARSVAATVIKAGDFWSLGLRALYFALNLLMWFFGPVPMFLSSVI TVTILCAADGNSQPLHRHSPVPAKAQPKSPIGPELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	0	1
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	1.4	0.9799
AT3G61930			unknown protein		Lus10030203 [exp]	2.0	0.9566
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	2.0	0.9742
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	2.4	0.9594
AT1G20180			Protein of unknown function (D...		Lus10010144 [exp]	5.5	0.9405
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	5.7	0.9441
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10042078 [exp]	6.5	0.9486
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	7.4	0.9560
AT1G09195			unknown protein		Lus10031400 [exp]	9.9	0.9306
AT2G01300			unknown protein		Lus10004062 [exp]	10.2	0.9267

Compare expression of checked genes

Lus10005266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.