Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46060 96 / 5e-24 Protein of unknown function, DUF599 (.1) AT3G18215 88 / 5e-21 Protein of unknown function, DUF599 (.1) AT5G24600 76 / 2e-16 Protein of unknown function, DUF599 (.1.2) AT5G10580 54 / 2e-08 Protein of unknown function, DUF599 (.1.2) AT4G31330 49 / 5e-07 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000133 [exp] 431 / 2e-155 AT5G46060 98 / 9e-25 Protein of unknown function, DUF599 (.1) Lus10013944 [exp] 380 / 1e-135 AT5G46060 100 / 3e-31 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 119 / 5e-33 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 119 / 1e-32 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10009010 [exp] 86 / 3e-20 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 87 / 6e-20 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 86 / 8e-20 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10032916 [exp] 74 / 2e-15 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 73 / 4e-15 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059400 [exp] 189 / 4e-60 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 105 / 1e-27 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.015G001300 [exp] 84 / 2e-19 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 82 / 1e-18 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 47 / 2e-06 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 42 / 0.0002 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10005267 pacid=23175322 polypeptide=Lus10005267 locus=Lus10005267.g ID=Lus10005267.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAAAAGGATTACCTCGACTTGTTCTTAGTACCGTCCGGCTTCTCATCCTCTTCACTTACCATCTTTACCTTCTCTACTTGCACCACAAGTC ACCTTGCTCCACAACAATCGGCCTCGAAGCATTCGACAAGATCAACTGGGTTCAAACCATCGTCAGGGCAAAATGGCGAGAAGGGCACGTTAGACAGAGC AGCGGCTGCGATCACAGGCAACACGACATCGGGGACATACCTCGCGACATTCTGCCTGACTCTAAGCTCGCTAGTCGGTACATTTCTCGGGCCCTCGAAC AGCTTGATCAACGGCAGCCGAATCTACGGAGACACAAGGCCGTCCACTCTTTTCATCAAGGACATCACGCTCCTCTCATGCTTACTCCTCGCGTTCTACG GATTCGTTCACGCTGTCAGGCTTCTGGTCCACGCCAACTACTTGCTGTTGATGAGCAGTCCGGAGAACAAGGATCTCGAGAAGAAAATCGAGTTCATGGT TACTAGAGGTGGATACTCTTGGGTGCTTGGACTCAGACCGCTCTACTTTGCTCTCAGTGTTCTTGTCTGGTTCTTCGGTCCCATACCCATGTTCACTTCT TGCATCGTCATGGTTATCGTCCTGTATTACAACAACATTTACATAGTCAAGTTGCACAACCTGTATTGTCGAATCCCGGAAAGCTATAGGTACTGA
AA sequence Show only first row Show all	>Lus10005267 pacid=23175322 polypeptide=Lus10005267 locus=Lus10005267.g ID=Lus10005267.BGIv1.0 annot-version=v1.0 MEFEKDYLDLFLVPSGFSSSSLTIFTFSTCTTSHLAPQQSASKHSTRSTGFKPSSGQNGEKGTLDRAAAAITGNTTSGTYLATFCLTLSSLVGTFLGPSN SLINGSRIYGDTRPSTLFIKDITLLSCLLLAFYGFVHAVRLLVHANYLLLMSSPENKDLEKKIEFMVTRGGYSWVLGLRPLYFALSVLVWFFGPIPMFTS CIVMVIVLYYNNIYIVKLHNLYCRIPESYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	0	1
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	3.3	0.8756
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	4.6	0.8415
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	5.7	0.8306
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10032149 [exp]	10.4	0.7687
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	11.0	0.8462
					Lus10004065 [exp]	15.1	0.7820
					Lus10029790 [exp]	19.0	0.8302
AT3G27870			ATPase E1-E2 type family prote...		Lus10008777 [exp]	21.7	0.8347
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10026341 [exp]	24.0	0.7877
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	27.9	0.8411

Compare expression of checked genes

Lus10005267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.